Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M07
         (876 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    59   1e-07
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    52   2e-05
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    52   3e-05
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    50   1e-04
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    45   0.002
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    44   0.004
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    41   0.036
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.083
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    40   0.11 
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ...    34   5.5  
UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1; Lentisp...    33   9.5  

>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 59.3 bits (137), Expect = 1e-07
 Identities = 38/84 (45%), Positives = 46/84 (54%)
 Frame = +1

Query: 319 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNXXXTQERTCEQXASXRP 498
           R   +C  G +PLPRSLTR ARSFGCGERY+LT     G       T++   ++      
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLTD----GDGNFLEDTRKTLSKEE----- 76

Query: 499 GTVXRPRCWRFSIGSAPLNEXHKN 570
               RPR  RFSIGSAPL    K+
Sbjct: 77  ---IRPRRSRFSIGSAPLTSIAKS 97



 Score = 39.9 bits (89), Expect = 0.083
 Identities = 17/26 (65%), Positives = 18/26 (69%)
 Frame = +2

Query: 554 TSXTKIDAHVRGGXTRQDYKDTXRFP 631
           TS  K DA + GG TRQDYKD  RFP
Sbjct: 92  TSIAKSDAQISGGETRQDYKDPRRFP 117


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 52.0 bits (119), Expect = 2e-05
 Identities = 29/51 (56%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +1

Query: 295 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQ 444
           CI + A AR EAV VL ALPL RS TRC RS GCG      +  R YG PQ
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQ 316


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 51.6 bits (118), Expect = 3e-05
 Identities = 26/38 (68%), Positives = 26/38 (68%)
 Frame = -1

Query: 495 PXAGXLLTXSFLRXXXILWITVLPPLSELIPLAAAERP 382
           P    LLT SF     ILWITVLPPLSEL PLAA ERP
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56


>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 49.6 bits (113), Expect = 1e-04
 Identities = 22/26 (84%), Positives = 22/26 (84%)
 Frame = +2

Query: 554 TSXTKIDAHVRGGXTRQDYKDTXRFP 631
           TS TKIDA VRGG TRQDYKDT RFP
Sbjct: 24  TSITKIDAQVRGGETRQDYKDTRRFP 49


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +2

Query: 98  DPDMIRYIDEFGQTTTRMQ 154
           DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 44.4 bits (100), Expect = 0.004
 Identities = 19/26 (73%), Positives = 20/26 (76%)
 Frame = +2

Query: 554 TSXTKIDAHVRGGXTRQDYKDTXRFP 631
           TS TK DA + GG TRQDYKDT RFP
Sbjct: 60  TSITKSDAQISGGETRQDYKDTRRFP 85


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 41.1 bits (92), Expect = 0.036
 Identities = 19/39 (48%), Positives = 25/39 (64%)
 Frame = +2

Query: 227 QVNNNNCIHFMFQVQGXVWEVFSALMNRPTRGERRFAYW 343
           ++ + NC+    +       V +ALMNRPTRGERRFAYW
Sbjct: 3   ELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.9 bits (89), Expect = 0.083
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -2

Query: 365 ERGSGRAPNTQTASPRALADSLMQ 294
           +R +  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 39.5 bits (88), Expect = 0.11
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = +3

Query: 414 HSKAVIRLSTESGXNAGKN 470
           HSKAVIRLSTESG NAGKN
Sbjct: 40  HSKAVIRLSTESGDNAGKN 58


>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
           Methanocorpusculum labreanum Z|Rep: Putative
           uncharacterized protein - Methanocorpusculum labreanum
           (strain ATCC 43576 / DSM 4855 / Z)
          Length = 109

 Score = 33.9 bits (74), Expect = 5.5
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -3

Query: 256 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 92
           +MNA V +  FIAA      +  +T +   AFF L S  G    ++VSY VW  L
Sbjct: 27  RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76


>UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1;
           Lentisphaera araneosa HTCC2155|Rep: Probable ECF sigma
           factor - Lentisphaera araneosa HTCC2155
          Length = 201

 Score = 33.1 bits (72), Expect = 9.5
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +2

Query: 176 EICDAIALFVTIISCNKQVNNNNCIHFMFQVQGXVWEVFSALMNRPTRGERRFAYW 343
           +  DA   F+ I   N  +N+++C   + +V   VWE  +     P RG  +F YW
Sbjct: 32  DFSDAYRRFIYIALRNNGLNHHDCEEVVQRVMIKVWEKIARFKYNPGRG--KFRYW 85


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 658,596,173
Number of Sequences: 1657284
Number of extensions: 10906338
Number of successful extensions: 39303
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 27213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35947
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 78292544701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)