Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M06
         (891 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51929| Best HMM Match : ARID (HMM E-Value=1.2)                      58   1e-08
SB_3948| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.058
SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)                   30   2.9  
SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_34845| Best HMM Match : CXC (HMM E-Value=0.03)                      29   5.1  
SB_35354| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_13856| Best HMM Match : CXC (HMM E-Value=0.021)                     29   6.7  
SB_12307| Best HMM Match : Death (HMM E-Value=0.00097)                 28   8.8  

>SB_51929| Best HMM Match : ARID (HMM E-Value=1.2)
          Length = 391

 Score = 58.0 bits (134), Expect = 1e-08
 Identities = 29/77 (37%), Positives = 42/77 (54%)
 Frame = +3

Query: 132 KSQLITDGYAILEDFLHVAECDEIKAAGLEFTENLPDIEERATFSTTEKTHLKDKYFLES 311
           +SQ  +DGY ++E+FL + E  E++ A     ++L   +   +   T    + D YFL S
Sbjct: 312 QSQFASDGYVVIENFLSLDEVQELREAMRNIVDDLDLSQNPLSVFKTGDDQVGDDYFLTS 371

Query: 312 NDKIRCFFEEGAIDADG 362
            DKIR F EEGA D  G
Sbjct: 372 GDKIRPFMEEGAFDKQG 388


>SB_3948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1112

 Score = 35.5 bits (78), Expect = 0.058
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +3

Query: 840 PNKSDKSRXAYTFHVVE 890
           PNKS KSR AYTFHVVE
Sbjct: 141 PNKSSKSRHAYTFHVVE 157



 Score = 32.3 bits (70), Expect = 0.54
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 745 PAAVYPQSSFTPIPVSKGPCILLHGXVVHKSSP 843
           P   Y  S   P+  +KG  +++HG V+H+S P
Sbjct: 109 PDEEYDDSKSVPLCTNKGALVIIHGSVLHRSFP 141


>SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)
          Length = 667

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = -1

Query: 561 DVQPLRNQCQGS*KYTCFAPQPAQ*SQALCKCSSRVHYTCN 439
           D Q     C    +Y C  P+P     + C   SR+ Y CN
Sbjct: 501 DCQDQFKCCFDGCRYNCILPKPDPAEHSTCPVMSRIPYMCN 541


>SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1564

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = -1

Query: 708 WVAGSNVCALLTCE----SLETATDSRFELWLLQELSRSQLGELVLCTDMLRLD 559
           W   S  CALLTCE    +LETA   R  +       + +L  +V+   +LR D
Sbjct: 627 WACFSQYCALLTCENHVVALETAKSLRSFVNFGSSSLKEELFRVVILPSILRCD 680


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +1

Query: 475  KSLALLSRLWCKACIFLRTLALVPKWLHIKTQHICTQNQLPQLASG*LLKKPQFKTAVC 651
            K++ LL +      +  R   LV KW  +   HI T   +    +G  +  PQ   A+C
Sbjct: 2047 KTINLLRKKTNNESLAKRAKKLVKKWQSLVINHIQTTRSVDSPLNGSRISSPQINGAIC 2105


>SB_34845| Best HMM Match : CXC (HMM E-Value=0.03)
          Length = 1397

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 622 KKPQFK-TAVCGCLEALTGQECTDV*SRNPDEDSDEALIYD 741
           KK   K T +CGC  +  G++C +    N +ED++E   YD
Sbjct: 411 KKSGLKCTDLCGC--SANGEDCQNKSGNNDEEDNEEESDYD 449


>SB_35354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 11  LPTHYREXLRFESCVATQYRRYLNSFCFCKFI 106
           L  +Y+  ++ + C AT Y  Y +  C C+++
Sbjct: 35  LDFNYKRAMKRKPCCATLYHLYFDDVCLCEWV 66


>SB_13856| Best HMM Match : CXC (HMM E-Value=0.021)
          Length = 464

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 640 TAVCGCLEALTGQECTDV*SRNPDEDSDEALIYD 741
           T +CGC  +  G++C +    N +ED++E   YD
Sbjct: 290 TDLCGC--SANGEDCQNKSGNNDEEDNEEESDYD 321


>SB_12307| Best HMM Match : Death (HMM E-Value=0.00097)
          Length = 1366

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 706 PDEDSDEALIYDKPAAVYPQSSFTPIPVSKGPCILL 813
           PDE+  E+L Y  PA +     F   P    PC LL
Sbjct: 859 PDENGKESLQYLVPAQLTSSPEFKVFPKDCDPCALL 894


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,976,999
Number of Sequences: 59808
Number of extensions: 609885
Number of successful extensions: 1416
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1416
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)