Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M05
         (919 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...    91   2e-19
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...    89   1e-18
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   7.3  

>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 91.5 bits (217), Expect = 2e-19
 Identities = 44/100 (44%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
 Frame = +2

Query: 197 PYGXAFVAGIDXYPRKVXKXMGXXKXHKRSXIKPFVKVVXYNHLMPTRYTVDFXFEK--F 370
           P+G A VAG++ YP KV K MG  +  +RS +KPF+KVV YNHLMPTRY ++    K   
Sbjct: 37  PFGHAVVAGVERYPLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLI 96

Query: 371 SAKDLXDPAKRKXLRFNTRVRFEEXXXXGXXXWFLQKLRF 490
           +A    +P +R   R   +  FEE    G   WF   LRF
Sbjct: 97  TADTFKEPTQRSAARKTVKKTFEEKYQSGKSAWFFTPLRF 136



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +1

Query: 121 LVLSGRYAGRKAIVVKNYDEGT 186
           L+  GR+AG+K ++++  D+G+
Sbjct: 12  LITRGRFAGKKVVILQAIDQGS 33


>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score = 88.6 bits (210), Expect = 1e-18
 Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
 Frame = +2

Query: 197 PYGXAFVAGIDXYPRKVXKXMGXXKXHKRSXIKPFVKVVXYNHLMPTRYTVDFXFEK--F 370
           P+G A VAG++ YP KV K MG  +  KRS +KPF+KV+ YNHLMPTRY ++    K   
Sbjct: 37  PFGHAVVAGVERYPLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLV 96

Query: 371 SAKDLXDPAKRKXLRFNTRVRFEEXXXXGXXXWFLQKLRF 490
           +     +P++R   +   +  FEE    G   WF   LRF
Sbjct: 97  TPTTFSEPSQRSAAKKTVKNTFEEKYQTGKSAWFFTPLRF 136



 Score = 30.3 bits (65), Expect = 0.40
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = +1

Query: 121 LVLSGRYAGRKAIVVKNYDEGT 186
           LV  GR+AG+K ++++N D+G+
Sbjct: 12  LVTRGRFAGKKVVILQNVDQGS 33


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.4 bits (48), Expect(2) = 7.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 537 PTNQTXXXPPPPXPXP 584
           PT  T   PPPP P P
Sbjct: 899 PTIITHPTPPPPPPLP 914



 Score = 20.6 bits (41), Expect(2) = 7.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 561 PPPPXPXPRXS 593
           PPPP P P  S
Sbjct: 946 PPPPPPPPLVS 956


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,933,081
Number of Sequences: 5004
Number of extensions: 23647
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)