Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M05
         (919 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)              95   5e-20
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)               30   3.0  

>SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)
          Length = 168

 Score = 95.5 bits (227), Expect = 5e-20
 Identities = 50/99 (50%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
 Frame = +2

Query: 194 KPYGXAFVAGIDXYPRKVXKXMGXXKXHKRSXIKPFVKVVXYNHLMPTRYTVDFXFEK-F 370
           KPYG A VAG+  YP KV K MG  +  KRS +KPFVKV  YNHLMPTRY+VD   +K  
Sbjct: 36  KPYGHALVAGVARYPLKVTKRMGKKRTAKRSKVKPFVKVFNYNHLMPTRYSVDVPLDKQV 95

Query: 371 SAKDL-XDPAKRKXLRFNTRVRFEEXXXXGXXXWFLQKL 484
             KD+  DPA +K      +   EE    G   WF QKL
Sbjct: 96  VNKDVFRDPALKKKALREVKSTLEERYKSGKNKWFFQKL 134



 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 16/23 (69%), Positives = 22/23 (95%)
 Frame = +1

Query: 121 LVLSGRYAGRKAIVVKNYDEGTS 189
           LVL GRYAG+KA+++KNYD+G+S
Sbjct: 12  LVLRGRYAGKKALIIKNYDDGSS 34


>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
          Length = 867

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +1

Query: 817 PPSLXPXPXPRAPPAXRXGPXPRSLXHXLXXPPP 918
           PP   P P P  PP       PR L   L  PPP
Sbjct: 217 PPPPPPSPSPPRPPPPPPPSPPRPLAAKLPEPPP 250


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,779,701
Number of Sequences: 59808
Number of extensions: 219682
Number of successful extensions: 2231
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2183
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2657535823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)