Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M05
         (919 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89308-1|AAB48626.1|  136|Caenorhabditis elegans ribosomal prote...    97   2e-20
AF003143-5|AAK68266.1|  136|Caenorhabditis elegans Ribosomal pro...    97   2e-20
AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical ...    29   4.7  
U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astaci...    28   8.1  

>U89308-1|AAB48626.1|  136|Caenorhabditis elegans ribosomal protein
           L27 homolog protein.
          Length = 136

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 46/101 (45%), Positives = 61/101 (60%), Gaps = 2/101 (1%)
 Frame = +2

Query: 194 KPYGXAFVAGIDXYPRKVXKXMGXXKXHKRSXIKPFVKVVXYNHLMPTRYTVDFXFEK-- 367
           + Y  A +AGID YP KV K MG  K  KR+ +KPF+KVV Y HL+PTRY+VD  F+K  
Sbjct: 36  RTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTN 95

Query: 368 FSAKDLXDPAKRKXLRFNTRVRFEEXXXXGXXXWFLQKLRF 490
            + + L  P+K++      + +FEE    G   WF  KLRF
Sbjct: 96  INKEALKAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLRF 136



 Score = 38.7 bits (86), Expect = 0.006
 Identities = 17/23 (73%), Positives = 19/23 (82%)
 Frame = +1

Query: 121 LVLSGRYAGRKAIVVKNYDEGTS 189
           LVL G+YAGRKA+VVK  DEG S
Sbjct: 12  LVLRGKYAGRKAVVVKQQDEGVS 34


>AF003143-5|AAK68266.1|  136|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 27 protein.
          Length = 136

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 46/101 (45%), Positives = 61/101 (60%), Gaps = 2/101 (1%)
 Frame = +2

Query: 194 KPYGXAFVAGIDXYPRKVXKXMGXXKXHKRSXIKPFVKVVXYNHLMPTRYTVDFXFEK-- 367
           + Y  A +AGID YP KV K MG  K  KR+ +KPF+KVV Y HL+PTRY+VD  F+K  
Sbjct: 36  RTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTN 95

Query: 368 FSAKDLXDPAKRKXLRFNTRVRFEEXXXXGXXXWFLQKLRF 490
            + + L  P+K++      + +FEE    G   WF  KLRF
Sbjct: 96  INKEALKAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLRF 136



 Score = 38.7 bits (86), Expect = 0.006
 Identities = 17/23 (73%), Positives = 19/23 (82%)
 Frame = +1

Query: 121 LVLSGRYAGRKAIVVKNYDEGTS 189
           LVL G+YAGRKA+VVK  DEG S
Sbjct: 12  LVLRGKYAGRKAVVVKQQDEGVS 34


>AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical
           protein F52G3.1 protein.
          Length = 1172

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 537 PTNQTXXXPPPPXPXPRXSL 596
           PTNQ    PPPP P P   L
Sbjct: 101 PTNQAPAVPPPPPPQPANDL 120


>U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astacin
           protease protein33 protein.
          Length = 644

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +1

Query: 817 PPSLXPXPXPRAPPAXRXGPXPRSLXHXLXXPPP 918
           PP   P P  R PP  R  P  R     L  PPP
Sbjct: 51  PPFGPPPPWDRPPPPWRRPPWHRRPPWGLPPPPP 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,482,627
Number of Sequences: 27780
Number of extensions: 175421
Number of successful extensions: 801
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)