Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M05
         (919 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)            80   2e-15
At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A)            78   9e-15
At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) simi...    76   4e-14
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro...    31   0.81 
At1g29030.1 68414.m03553 apoptosis inhibitory 5 (API5) family pr...    31   1.4  
At1g02405.1 68414.m00187 proline-rich family protein contains pr...    29   3.3  
At4g18570.1 68417.m02749 proline-rich family protein common fami...    29   5.7  
At5g23150.1 68418.m02707 PWWP domain-containing protein identica...    28   7.5  
At5g07770.1 68418.m00889 formin homology 2 domain-containing pro...    28   7.5  

>At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)
          Length = 135

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
 Frame = +2

Query: 194 KPYGXAFVAGIDXYPRKVXKXMGXXKXHKRSXIKPFVKVVXYNHLMPTRYTVDFXFEKFS 373
           +PYG   VAG+  YP KV +     K  K+S +K F+K+V Y HLMPTRYT+D   ++ +
Sbjct: 36  RPYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVA 95

Query: 374 AKDLXDPAKRKXLRF-NTRVRFEEXXXXGXXXWFLQKLRF 490
             D      +K       + + EE    G   WF  KLRF
Sbjct: 96  TLDALQSKDKKVAALKEAKAKLEERFKTGKNRWFFTKLRF 135



 Score = 37.5 bits (83), Expect = 0.012
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +1

Query: 121 LVLSGRYAGRKAIVVKNYDEGTSXQAVRACFRRWYRXVPPESAQXD 258
           ++L GRYAG+KA+++K++D+G   +    C     +  P +  + D
Sbjct: 12  ILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKD 57


>At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A) 
          Length = 135

 Score = 77.8 bits (183), Expect = 9e-15
 Identities = 38/100 (38%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
 Frame = +2

Query: 194 KPYGXAFVAGIDXYPRKVXKXMGXXKXHKRSXIKPFVKVVXYNHLMPTRYTVDFXFEKFS 373
           K YG   VAG+  YP KV +     K  K+S +K F KV+ Y H+MPTRYT+D   +   
Sbjct: 36  KKYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVV 95

Query: 374 AKDLXDPAKRKXLRF-NTRVRFEEXXXXGXXXWFLQKLRF 490
           + D      +K       + +FEE    G   WF  KLRF
Sbjct: 96  SADAISSKDKKVTALKEAKAKFEERFKTGKNRWFFTKLRF 135



 Score = 37.9 bits (84), Expect = 0.009
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +1

Query: 121 LVLSGRYAGRKAIVVKNYDEGTSXQAVRACFRRWYRXVPPESAQXD 258
           ++L GRY G+KA++VK++D+GT  +    C     +  P +  + D
Sbjct: 12  ILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKD 57


>At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) similar
           to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum
           tuberosum]
          Length = 135

 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
 Frame = +2

Query: 200 YGXAFVAGIDXYPRKVXKXMGXXKXHKRSXIKPFVKVVXYNHLMPTRYTVDFXFEKFSAK 379
           YG   VAG+  YP KV +     K  K+S +K F+K+V Y HLMPTRYT+D   ++ +  
Sbjct: 38  YGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATL 97

Query: 380 D-LXDPAKRKXLRFNTRVRFEEXXXXGXXXWFLQKLRF 490
           D L    K+       + + EE    G   WF  KLRF
Sbjct: 98  DALKSKDKKVTALKEAKAKLEERFKTGKNRWFFTKLRF 135



 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 16/46 (34%), Positives = 29/46 (63%)
 Frame = +1

Query: 121 LVLSGRYAGRKAIVVKNYDEGTSXQAVRACFRRWYRXVPPESAQXD 258
           ++L GRYAG+KA+++K++D+GTS +    C     +  P +  + D
Sbjct: 12  ILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKD 57


>At1g31810.1 68414.m03904 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|P48608 Diaphanous protein {Drosophila
           melanogaster}; contains Pfam profile PF02181: Formin
           Homology 2(FH2) Domain
          Length = 1201

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +1

Query: 817 PPSLXPXPXPRAPPAXRXGPXPRSLXHXLXXPPP 918
           PP L   P PR PP     P  RS+      PPP
Sbjct: 588 PPPLAQPPPPRPPPPPPPPPSSRSIPSPSAPPPP 621


>At1g29030.1 68414.m03553 apoptosis inhibitory 5 (API5) family
           protein contains Pfam profile PF05918: Apoptosis
           inhibitory protein 5 (API5)
          Length = 556

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = -3

Query: 917 GGGXXSX*XRERGXGPXRXAGGARGXGXGXR 825
           GGG  S   R RG G  R +GG  G G G R
Sbjct: 523 GGGRGSHRGRGRGQGQGRHSGGGGGRGRGRR 553


>At1g02405.1 68414.m00187 proline-rich family protein contains
           proline-rich region, INTERPRO:IPR000694
          Length = 134

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +1

Query: 817 PPSLXPXPXPRAPPAXRXGPXPRSLXHXLXXPPP 918
           PPS  P P P +PP  +    P S       PPP
Sbjct: 57  PPSCTPSPPPPSPPPPKKSSCPPSPLPPPPPPPP 90


>At4g18570.1 68417.m02749 proline-rich family protein common family
           members: At3g25690, At4g04980, At5g61090 [Arabidopsis
           thaliana]
          Length = 642

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +1

Query: 817 PP--SLXPXPXPRAPPAXRXGPXPRSLXHXLXXPPP 918
           PP  S+ P P P  PP  +  P P S+      PPP
Sbjct: 304 PPQKSIPPPPPPPPPPLLQQPPPPPSVSKAPPPPPP 339


>At5g23150.1 68418.m02707 PWWP domain-containing protein identical to
            cDNA putative transcription factor (HUA2) GI:4868119;
            contains Pfam profile  PF00855:  PWWP domain
          Length = 1392

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 817  PPSLXPXPXPRAPPAXRXGPXPRSLXHXLXXPP 915
            PPS  P P P  PP+    P P +L   L  PP
Sbjct: 1076 PPS-PPPPSPPLPPSSLPPPPPAALFPPLPPPP 1107


>At5g07770.1 68418.m00889 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 722

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 832 PXPXPRAPPAXRXGPXPRSLXHXLXXPPP 918
           P P P  PP  R  P P  +   +  PPP
Sbjct: 22  PLPPPPPPPMRRSAPSPPPMSGRVPPPPP 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,970,610
Number of Sequences: 28952
Number of extensions: 178109
Number of successful extensions: 1035
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2178500352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)