Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M04
         (896 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   4.3  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   5.7  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   5.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   7.5  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 529 CWFCLWSHRMQFCCGFV 479
           C F +++  + FCC F+
Sbjct: 171 CAFIIFTMHLLFCCAFI 187


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 557 CLENNRVYFKIMSTEDKQY-LKLDN 628
           C+E+N + F + +T+D  Y L++ N
Sbjct: 79  CIESNMISFYLEATDDFAYFLEVSN 103


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 536 TFLLVLSLESPNAILLWFCWSINLRA*XSLLFMSLTV 426
           T+L+    E  +  +LW C S N      +L +S TV
Sbjct: 242 TYLIWTIYEMYHLAILWSCTSTNCPRFLIMLALSYTV 278


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 560  LENNRVYFKIMSTEDKQYLKLDNTK 634
            +E   VY+K +ST+DK  +K  + K
Sbjct: 1231 VEYYTVYYKPVSTDDKTEVKPTSQK 1255


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,985
Number of Sequences: 336
Number of extensions: 3311
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24927353
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)