Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M04
         (896 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0343 - 16960764-16960895,16961166-16961171,16961272-169616...    29   3.8  
12_02_0754 - 22817277-22817657,22817796-22817927,22818026-228182...    28   8.8  

>10_08_0343 - 16960764-16960895,16961166-16961171,16961272-16961640,
            16962118-16962304,16962567-16962759,16962864-16963137,
            16963215-16963374,16963985-16964199,16964784-16964876,
            16965192-16965260,16965293-16965445,16965534-16965737,
            16966416-16966691,16967336-16967431,16967585-16967788,
            16967877-16968069,16968229-16968374,16968771-16969425,
            16971462-16971774,16971989-16972139,16972602-16973815,
            16973933-16974182,16974784-16975035
          Length = 1934

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = -3

Query: 570  LFSKHGGKLPGDFLAGFVFGVTECNFVVVLLVDQLEGVXVPFVYELDSLLGEDHSKLDGE 391
            LFSK+ G+ P   + GF F VTE     + L D LE        E D+  G    K    
Sbjct: 1304 LFSKYFGEAPIMHIPGFTFPVTE-----LFLEDILEKTRYKINSERDNFQGNSRRKRLAS 1358

Query: 390  VRFD---DFLSILXP 355
            V+ D   D   +L P
Sbjct: 1359 VKSDPISDAFELLDP 1373


>12_02_0754 -
           22817277-22817657,22817796-22817927,22818026-22818272,
           22818473-22818909
          Length = 398

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/69 (24%), Positives = 35/69 (50%)
 Frame = +1

Query: 388 YFPIQFRVIFTEQTVKLINKRDXHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVFGK 567
           +F +  RV+   + +KL+ +RD    K I++QN     +G    + S++V++ F   +G 
Sbjct: 315 FFVLNARVL---ECIKLVARRDKCEAKWIEKQNQKLQLYG----RASRRVTFDFQADYGV 367

Query: 568 QQSLLQDHV 594
              +   H+
Sbjct: 368 DSLVHMKHI 376


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,148,936
Number of Sequences: 37544
Number of extensions: 379360
Number of successful extensions: 916
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)