Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M04
         (896 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46258| Best HMM Match : Vicilin_N (HMM E-Value=4.7)                 29   6.7  
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)               28   8.9  
SB_19950| Best HMM Match : AIP3 (HMM E-Value=1.7)                      28   8.9  

>SB_46258| Best HMM Match : Vicilin_N (HMM E-Value=4.7)
          Length = 406

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 481 QNHNKIAFGDSKDKTSKKVSWKFTPVFGKQQSLLQDHVHRGQ 606
           +   K+ + D++DK  +K++W  T   G+Q+    D   +GQ
Sbjct: 9   KRRQKMTWDDTRDKRRQKMTWDDTQDEGRQKMTRDDMWDKGQ 50


>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
          Length = 1712

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 475 DQQNHNKIAFGDSKDKT-SKKVSWKFTPVFGKQQSLLQDHVHRGQTVPEAR*HERF 639
           D+ +  + A G  +  T   + S K +  FG  + L +  +HRG+ V + R  ER+
Sbjct: 320 DKHDDGRTAIGRFQAPTYDSRPSEKMSYTFGTAEPLRKSSLHRGKPVEKTRAKERY 375


>SB_19950| Best HMM Match : AIP3 (HMM E-Value=1.7)
          Length = 427

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 518 TKPARKSPGSLPPCLENNRVYFKIMSTEDKQY 613
           TKP R SPG+ PP + N+     ++S  +K Y
Sbjct: 118 TKP-RSSPGAYPPTMRNSYSLDDVVSALEKSY 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,022,645
Number of Sequences: 59808
Number of extensions: 433235
Number of successful extensions: 1045
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)