Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_M04
(896 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 31 1.1
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 31 1.1
AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel... 31 1.1
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 31 1.1
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 31 1.1
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 31 1.1
Z19158-3|CAA79572.2| 305|Caenorhabditis elegans Hypothetical pr... 29 4.5
AF047659-5|AAC04429.1| 347|Caenorhabditis elegans Hypothetical ... 29 4.5
AL023835-5|CAA19490.1| 471|Caenorhabditis elegans Hypothetical ... 28 7.9
AC024202-12|AAF36031.2| 143|Caenorhabditis elegans Hypothetical... 28 7.9
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -2
Query: 721 SYMEGSRYQWCLKVSAVLSPVDDTVITRTFRVIEL 617
SY+E R +W LK++ +S + TV T R IEL
Sbjct: 43 SYVESDRVEWALKIACTISMI--TVCIHTPRTIEL 75
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -2
Query: 721 SYMEGSRYQWCLKVSAVLSPVDDTVITRTFRVIEL 617
SY+E R +W LK++ +S + TV T R IEL
Sbjct: 43 SYVESDRVEWALKIACTISMI--TVCIHTPRTIEL 75
>AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
b protein.
Length = 978
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -2
Query: 721 SYMEGSRYQWCLKVSAVLSPVDDTVITRTFRVIEL 617
SY+E R +W LK++ +S + TV T R IEL
Sbjct: 101 SYVESDRVEWALKIACTISMI--TVCIHTPRTIEL 133
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -2
Query: 721 SYMEGSRYQWCLKVSAVLSPVDDTVITRTFRVIEL 617
SY+E R +W LK++ +S + TV T R IEL
Sbjct: 101 SYVESDRVEWALKIACTISMI--TVCIHTPRTIEL 133
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -2
Query: 721 SYMEGSRYQWCLKVSAVLSPVDDTVITRTFRVIEL 617
SY+E R +W LK++ +S + TV T R IEL
Sbjct: 101 SYVESDRVEWALKIACTISMI--TVCIHTPRTIEL 133
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -2
Query: 721 SYMEGSRYQWCLKVSAVLSPVDDTVITRTFRVIEL 617
SY+E R +W LK++ +S + TV T R IEL
Sbjct: 73 SYVESDRVEWALKIACTISMI--TVCIHTPRTIEL 105
>Z19158-3|CAA79572.2| 305|Caenorhabditis elegans Hypothetical
protein T23G5.6 protein.
Length = 305
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 521 KPARKSPGSLPPCLENNRVYFKIMSTEDKQYLKLDNTKGSSD 646
KP +K P +PP N + I S E + LK SSD
Sbjct: 106 KPYQKDPEPMPPICTNGNGFLDINSQEHENNLKRGYESDSSD 147
>AF047659-5|AAC04429.1| 347|Caenorhabditis elegans Hypothetical
protein K07H8.8 protein.
Length = 347
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = +1
Query: 325 GTPWXFAYQLWTKDGKEIVKSYFPIQFRVIFTEQTVKLINKRDXHALKLIDQQNHNKIAF 504
G FA Q W D K +K+ IQ+ TE+ + N + + ++N N++
Sbjct: 239 GADTHFAPQTWYCDMKNNIKNSTVIQYSSTGTEKIKMIDNLLTVFKNRNVPEENLNEVRE 298
Query: 505 GDSKDKTSKKVS 540
SK KT S
Sbjct: 299 ELSKGKTQHSTS 310
>AL023835-5|CAA19490.1| 471|Caenorhabditis elegans Hypothetical
protein Y37A1B.5 protein.
Length = 471
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 521 KPARKSPGSLPPCLENNRVYFKIMSTEDKQYLK 619
KP K + PCL ++R+Y + E K YL+
Sbjct: 86 KPTEKRSHLIVPCLNSDRIYIINVENERKIYLE 118
>AC024202-12|AAF36031.2| 143|Caenorhabditis elegans Hypothetical
protein Y71H2B.1 protein.
Length = 143
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 201 LYMXVVIGXYXXAIA-KCSEYLKEKXGXVIKEAVKRLIE 314
LYM +G Y A KC +Y K+ G EA++ I+
Sbjct: 87 LYMQATVGDYDGNTALKCGQYWKKHSGKTQIEAIREYIK 125
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,742,916
Number of Sequences: 27780
Number of extensions: 315233
Number of successful extensions: 898
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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