Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M04
         (896 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar...    30   2.4  
At3g29080.1 68416.m03641 hypothetical protein                          29   3.2  
At4g13290.1 68417.m02078 cytochrome P450 71A19, putative (CYP71A...    29   5.5  
At1g62250.2 68414.m07023 expressed protein                             28   7.3  
At1g62250.1 68414.m07022 expressed protein                             28   7.3  
At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger) fa...    28   9.7  

>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
           SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain
          Length = 733

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 21/76 (27%), Positives = 36/76 (47%)
 Frame = +3

Query: 510 LQRQNQQESLLEVYPRVWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTGDSTADTFK 689
           L+ +N++E L E   ++++TT   S + PP          R  +V+T+ + G  T D   
Sbjct: 496 LKPENEEEELDE--KKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAG-KTTDLIS 552

Query: 690 HHWYLEPSMYESDVMF 737
            H  +   M ES+  F
Sbjct: 553 QHVIM---MKESEKFF 565


>At3g29080.1 68416.m03641 hypothetical protein
          Length = 445

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 263 EGKXGXGYQGSREASDRKRQEEHHGXSPTSYGXRMERK 376
           E + G GY    EA D +R+ +H   S ++ G   ERK
Sbjct: 395 EAEEGSGYHQRWEALDSRRKHDHSRTSGSALGTGTERK 432


>At4g13290.1 68417.m02078 cytochrome P450 71A19, putative (CYP71A19)
           Identical to Cytochrome P450 (SP:Q9T0K0) [Arabidopsis
           thaliana]; similar to cytochrome P450LXXIA1, Persea
           americana, M32885
          Length = 490

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 462 GVXVPFVYELDSLLGEDHSKLDGEVRFDDFL 370
           G  +P +  +D + G+DH   + + RFD+FL
Sbjct: 221 GEYIPSLSWIDKIRGQDHKMEEVDKRFDEFL 251


>At1g62250.2 68414.m07023 expressed protein
          Length = 223

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 115 LCLPSSSPCVRWLLTPHLHQXLMXYWRSXCIXVSS 219
           LC P  +  +RW  TP +   ++  WR  C  +++
Sbjct: 181 LCTPQPT-VIRWSSTPSVSDEILSKWRGFCAVIAN 214


>At1g62250.1 68414.m07022 expressed protein
          Length = 267

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 115 LCLPSSSPCVRWLLTPHLHQXLMXYWRSXCIXVSS 219
           LC P  +  +RW  TP +   ++  WR  C  +++
Sbjct: 181 LCTPQPT-VIRWSSTPSVSDEILSKWRGFCAVIAN 214


>At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 Zinc
           finger, C3HC4 type (RING finger)
          Length = 496

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
 Frame = +2

Query: 506 VTPKTKPA-----RKSPGSLPPCLENNRVYFK 586
           V+P   PA     +++P + PPC   NRV+FK
Sbjct: 365 VSPVASPAPHRSRKRAPSAPPPCNPGNRVHFK 396


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,050,995
Number of Sequences: 28952
Number of extensions: 304031
Number of successful extensions: 702
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)