Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M03
         (912 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719...   130   2e-30
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460...    56   5e-08
04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590     54   2e-07
04_04_0303 + 24269467-24270741                                         31   0.96 
07_03_0203 + 15138864-15140452,15140629-15140726,15141924-151422...    28   9.0  

>04_03_0487 +
           16471538-16471540,16471694-16471795,16471880-16471908,
           16472619-16472745
          Length = 86

 Score =  130 bits (313), Expect = 2e-30
 Identities = 57/78 (73%), Positives = 63/78 (80%)
 Frame = +3

Query: 90  IDLLHPSPASEXXXHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 269
           IDLL+P    E   HK KRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC GC T+LC
Sbjct: 7   IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLC 66

Query: 270 QPTGGRARLTEGCSFRRK 323
           QPTGG+ARLTEGCSFRRK
Sbjct: 67  QPTGGKARLTEGCSFRRK 84


>02_03_0220 +
           16545571-16545573,16545717-16545818,16545980-16546008,
           16549421-16553036
          Length = 1249

 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 25/46 (54%), Positives = 30/46 (65%)
 Frame = +3

Query: 90  IDLLHPSPASEXXXHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHA 227
           IDLL+P    E   HK KRLV  PNS+FMDVKC GC+ ++  F  A
Sbjct: 7   IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNMSVRFDIA 52


>04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590
          Length = 45

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 23/39 (58%), Positives = 27/39 (69%)
 Frame = +3

Query: 90  IDLLHPSPASEXXXHKLKRLVPHPNSYFMDVKCPGCYKI 206
           IDLL+P    E   HK KRLV  PNS+FMDVKC GC+ +
Sbjct: 7   IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFSM 45


>04_04_0303 + 24269467-24270741
          Length = 424

 Score = 31.5 bits (68), Expect = 0.96
 Identities = 22/68 (32%), Positives = 32/68 (47%)
 Frame = +3

Query: 87  AIDLLHPSPASEXXXHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 266
           A+ LLHP          L  ++PH  S  +D  CP  Y+I ++     RVV    C+++ 
Sbjct: 148 AVRLLHPFTGDTAELPPLGTVLPHLGSRLLD--CPAPYRIRSL----ARVV----CASVS 197

Query: 267 CQPTGGRA 290
           C  TG  A
Sbjct: 198 CSATGAGA 205


>07_03_0203 +
           15138864-15140452,15140629-15140726,15141924-15142235,
           15142437-15142749,15144025-15146023,15147033-15147068
          Length = 1448

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 9   NYRLT-YREFLXFVFSRLCIKAVTMPLAIDLLHPSPASEXXXHKLKRLVPHPNSYFMDVK 185
           NY L   R  L  + S+L    + + +  ++  P+P +E    ++K L      Y  D+ 
Sbjct: 601 NYNLKGVRNELVLLKSQLSELNILLEVLAEMDEPAPLAEKWMSQVKELTYDVEDYIDDLS 660

Query: 186 CPGCY 200
           C G Y
Sbjct: 661 CQGHY 665


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,035,640
Number of Sequences: 37544
Number of extensions: 236648
Number of successful extensions: 407
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)