Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M03
         (912 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)           132   2e-31
At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A) iden...   129   2e-30
At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)           124   1e-28
At4g21100.1 68417.m03051 UV-damaged DNA-binding protein, putativ...    30   1.9  
At2g44870.1 68415.m05586 expressed protein                             30   1.9  

>At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)
          Length = 84

 Score =  132 bits (320), Expect = 2e-31
 Identities = 57/78 (73%), Positives = 63/78 (80%)
 Frame = +3

Query: 90  IDLLHPSPASEXXXHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 269
           IDLLHP P  E   HKLKRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC  C T+LC
Sbjct: 7   IDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLC 66

Query: 270 QPTGGRARLTEGCSFRRK 323
           QPTGG+ARL EGCSFR+K
Sbjct: 67  QPTGGKARLQEGCSFRKK 84


>At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A)
           identical to cDNA ribosomal protein S27 (ARS27A)
           GI:4193381
          Length = 86

 Score =  129 bits (312), Expect = 2e-30
 Identities = 57/78 (73%), Positives = 63/78 (80%)
 Frame = +3

Query: 90  IDLLHPSPASEXXXHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 269
           IDLL+P    E   HKLKRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC  C TILC
Sbjct: 7   IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILC 66

Query: 270 QPTGGRARLTEGCSFRRK 323
           QPTGG+A+LTEGCSFRRK
Sbjct: 67  QPTGGKAKLTEGCSFRRK 84


>At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)
          Length = 84

 Score =  124 bits (298), Expect = 1e-28
 Identities = 53/78 (67%), Positives = 62/78 (79%)
 Frame = +3

Query: 90  IDLLHPSPASEXXXHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 269
           IDLL+P    E   HKLKRLV  PNS+FMDVKC GC+ ITTVFSH+Q VV+C  C T+LC
Sbjct: 7   IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLC 66

Query: 270 QPTGGRARLTEGCSFRRK 323
            PTGG+A+LTEGCSFR+K
Sbjct: 67  TPTGGKAKLTEGCSFRKK 84


>At4g21100.1 68417.m03051 UV-damaged DNA-binding protein, putative
           similar to UV-damaged DNA binding protein (GI:12082087)
           [Oryza sativa] and damage-specific DNA binding protein
           1, Homo sapiens, PIR2:I38908; contains Pfam PF03178 :
           CPSF A subunit region
          Length = 1088

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
 Frame = +3

Query: 54  RLCIKAVTMPLAIDLLHPSPASEXXXHKLKRLVPHPN-----SYFMDVKCPGCYKITTVF 218
           R+C +  T   AI  L   P++E       RL+   +     SY +D    GC  ++  F
Sbjct: 717 RICHQEQTRTFAISCLRNEPSAEESESHFVRLLDAQSFEFLSSYPLDAFECGCSILSCSF 776

Query: 219 SHAQRVVVCAGCSTIL---CQPTGGR 287
           +  + V  C G + +L    +PT GR
Sbjct: 777 TDDKNVYYCVGTAYVLPEENEPTKGR 802


>At2g44870.1 68415.m05586 expressed protein
          Length = 248

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 162 NSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTG 281
           N++ +  +CP C +      +  +++ C GC  I+ QP G
Sbjct: 175 NNFVIKGECPACKR--QFIGYKNQIIRCEGCGNIVWQPQG 212


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,454,593
Number of Sequences: 28952
Number of extensions: 183569
Number of successful extensions: 341
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2159049456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)