Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_M02
(883 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 30 2.4
At3g50230.1 68416.m05493 leucine-rich repeat transmembrane prote... 29 3.1
At3g19830.1 68416.m02512 C2 domain-containing protein low simila... 29 3.1
At5g58040.1 68418.m07263 fip1 motif-containing protein contains ... 29 4.1
At3g20830.1 68416.m02634 protein kinase family protein contains ... 29 4.1
At5g45050.2 68418.m05524 disease resistance protein-related simi... 29 5.4
At5g45050.1 68418.m05523 disease resistance protein-related simi... 29 5.4
At1g50260.1 68414.m05635 C2 domain-containing protein low simila... 28 7.2
At5g20380.1 68418.m02424 transporter-related low similarity to v... 28 9.5
At3g50370.1 68416.m05508 expressed protein 28 9.5
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -1
Query: 739 PTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGK 623
P A R RH+ R +GG+ S R R R + GA RG+
Sbjct: 571 PARGAPRGRHSDRAPRGGRFS-DRAPRGRHSDRGAPRGR 608
>At3g50230.1 68416.m05493 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase (RKL1),
Arabidopsis thaliana, EMBL:AF084034
Length = 660
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 641 LVRSPVPTLPLTGYLSAFLPSGSVAL 718
L+R +LP T Y +FLPS +VAL
Sbjct: 15 LLRISTASLPATNYFDSFLPSDAVAL 40
>At3g19830.1 68416.m02512 C2 domain-containing protein low
similarity to GLUT4 vesicle protein [Rattus norvegicus]
GI:4193489; contains Pfam profile PF00168: C2 domain
Length = 666
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 488 KRPGTVKRPRCWRFSIGSAPLNEHHKNRRSSQR 586
K+P V+R +FS+G PL+ + RR+S+R
Sbjct: 238 KKPDYVQRVEIKQFSLGDEPLSVRNVERRTSRR 270
>At5g58040.1 68418.m07263 fip1 motif-containing protein contains Pfam
profile PF05182: Fip1 motif
Length = 1192
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = -1
Query: 799 NGGFVHTAQLGAXDLH--RTEIPTA*AMRKRHASRREKGGQVSGKRQGRNR 653
NG V T G D R+EIP KRH G ++ ++GR +
Sbjct: 1003 NGSSVVTGSKGTNDARNCRSEIPHQPNTAKRHKENASSGDEIHDSKRGRTK 1053
>At3g20830.1 68416.m02634 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 408
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 340 PIRKPPLPARWPIH*CRKNXP 278
P PP P R P H CRKN P
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDP 404
>At5g45050.2 68418.m05524 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1344
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 349 PLPRSLTRCARSFGCGERYQLTQRR 423
P PRS RCA S GC R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193
>At5g45050.1 68418.m05523 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1372
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 349 PLPRSLTRCARSFGCGERYQLTQRR 423
P PRS RCA S GC R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221
>At1g50260.1 68414.m05635 C2 domain-containing protein low
similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
contains Pfam profile PF00168: C2 domain
Length = 675
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 488 KRPGTVKRPRCWRFSIGSAPLNEHHKNRRSSQR 586
K+P V+R +FS+G PL+ + R++S+R
Sbjct: 226 KKPDYVQRVEIKQFSLGDEPLSVRNVERKTSRR 258
>At5g20380.1 68418.m02424 transporter-related low similarity to
vesicular glutamate transporter 3 [Rattus norvegicus]
GI:21685382
Length = 517
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -2
Query: 513 GLFTVPGLLLAFCSHVLSCVIXLILWITVLPPLSELIPLAAAER 382
G +T L + S LS + W+++LPPL+ ++ + A +
Sbjct: 332 GHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQ 375
>At3g50370.1 68416.m05508 expressed protein
Length = 2179
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 538 LRPPERASQKSTLKSEVAKPDRTIKIPGVS 627
L PP+ + QK++ +SEV P + I G++
Sbjct: 794 LPPPQESRQKTSFRSEVEHPGPSTSIGGIN 823
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,894,986
Number of Sequences: 28952
Number of extensions: 292258
Number of successful extensions: 730
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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