Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_M01
         (857 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59124| Best HMM Match : Bac_luciferase (HMM E-Value=1.6)            28   8.5  
SB_55438| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   28   8.5  

>SB_59124| Best HMM Match : Bac_luciferase (HMM E-Value=1.6)
          Length = 1953

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 238  RPTFSIFLKSFHLGSGAALTAPRASTN 158
            RP+F + LKS   G+GAA   P   TN
Sbjct: 1831 RPSFKLVLKSLEEGNGAARVRPCRITN 1857


>SB_55438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 191 SSADRAESQHQREDEAQNTYEIHFTEXLXCRRXQXXN 81
           +  D  E + + E+E +++YE  +TE L  RR    N
Sbjct: 341 NQVDGEEEEEEEEEEEEDSYEDEYTEILQRRRVVSFN 377


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 191  SSADRAESQHQREDEAQNTYEIHFTEXLXCRRXQXXN 81
            +  D  E + + E+E +++YE  +TE L  RR    N
Sbjct: 985  NQVDGEEEEEEEEEEEEDSYEDEYTEILQRRRVVSFN 1021


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,146,564
Number of Sequences: 59808
Number of extensions: 231333
Number of successful extensions: 439
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)