Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L24
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    31   0.17 
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    27   4.8  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    27   4.8  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    26   6.3  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    26   8.4  

>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 16/67 (23%), Positives = 32/67 (47%)
 Frame = +3

Query: 567 IFCQHGSYK*NGLR*DDGWLPWTRKYVIITELSKKTXNSXCTPTIPXPWTYPNNEDRIAY 746
           ++ Q  +Y  N LR D  WL W  KY+   +++++   +     IP  W   +  D +  
Sbjct: 20  LYLQGTNYGENVLRSDPRWLKW-EKYLREFDMTREGNVTNTPKAIPSSWNPNDKSDSLEL 78

Query: 747 LTEDVGL 767
           +  ++G+
Sbjct: 79  MNNNMGV 85


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +3

Query: 6   LXYRLTYREFLKIL---TVRFYGSDHEDCLDFSGAYCPRS 116
           L Y +TYR+FLK     TV  + S  +D + FS     R+
Sbjct: 305 LPYMITYRKFLKQFTQATVEVWSSTRDDSVRFSAVVLLRT 344


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 670 FFDNSVIITYFLVQGNHPSS*RSPFYL*LPC*QNIEDKLR 551
           F  N  +  Y  +  NHPS  RSPF L     Q  E+ L+
Sbjct: 308 FGSNVTLQVYCFINVNHPSLNRSPFTLATNSMQEEEEHLK 347


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
 Frame = -2

Query: 417  GIIEQLEQRXGFFPHFFVKD---REFQILGKESDLVHHHEIFVGFHVCVAVLA-GLDVEV 250
            G  + +E        F++K+   +E Q   K  D +HH EI++  H+    +A  L +  
Sbjct: 1029 GFKKSIEDSYTMKKRFWIKEYFLKEVQASWKTDDNLHHGEIYLRNHILSDEMANNLSILP 1088

Query: 249  LGDFVVLSFIADLVNVVEKRQ--NLLLLFDERSVNRCRFEFRYGATESEGN 103
            +     +S+ ++ V  V  R+   L+L F   +    R++  +    ++ N
Sbjct: 1089 IRIQAWVSYDSEKVTTVCPREPFKLVLEFFGHADTNMRYKISWTQLNTQAN 1139


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -2

Query: 339 GKESDLVHHHEIFVGFHVCVAVLAGLDVEVLGDFVVLSFIADLVNVVE-KRQNLLLLFDE 163
           G  S  +HHH++ +  H  +  L G   EV G    L++ +D + +      N++ ++D 
Sbjct: 279 GSRSGAIHHHDVRIANHQ-IGTLQGHSSEVCG----LAWRSDGLQLASGGNDNVVQIWDA 333

Query: 162 RS 157
           RS
Sbjct: 334 RS 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,138,468
Number of Sequences: 5004
Number of extensions: 58204
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)