Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L24
         (898 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0025 - 244068-244177,244279-244333,244500-244527,244621-24...    30   2.9  
04_03_0513 - 16681227-16683936,16685572-16685966                       29   5.0  

>06_01_0025 -
           244068-244177,244279-244333,244500-244527,244621-244691,
           244829-244926,245069-245186,245573-245636,245744-245808,
           245893-245928,246255-246311,246422-246691
          Length = 323

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +3

Query: 711 WTYPNNEDRIAYLTEDVGLNAYYYYFHSXLPFWWXSGNTE---LSGTSW 848
           W      D IA ++ + GL   + + H      W SGNTE   L+G +W
Sbjct: 231 WANVWQTDCIARVSHEDGLVVGWIFLHELRQHLWNSGNTEIDVLNGIAW 279


>04_03_0513 - 16681227-16683936,16685572-16685966
          Length = 1034

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +3

Query: 267  QQGLLHKHESLRKFHDDVXGRIPSQEFGILDLL 365
            Q G+LH+ ESL    +D+ G IP QE   LD L
Sbjct: 905  QLGMLHQLESLDLSSNDLSGEIP-QELASLDFL 936


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,498,274
Number of Sequences: 37544
Number of extensions: 341212
Number of successful extensions: 728
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)