Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L23
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i...   138   1e-33
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr...   109   7e-25
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr...    98   2e-21
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans...    85   1e-17
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans...    82   1e-16
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    69   1e-12
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    49   1e-06
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    43   7e-05

>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score =  138 bits (334), Expect = 1e-33
 Identities = 72/141 (51%), Positives = 78/141 (55%)
 Frame = +3

Query: 300 KGPKVTXKVXFDXXXGXXXXGTXVXGLFGKXVPKTTEXFFQLAXKPEGXGYXGXXFHRVI 479
           +GPKVT  V FD   G    G    GLFGK VPKT E F  LA   +G GY G  FHRVI
Sbjct: 21  RGPKVTDTVYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHRVI 80

Query: 480 KNFMIQXXXXXXXXXXXXXXXXXXRFEDXNFKLKHYGAGWLSMANAGXXTNGSXFFITTV 659
            NFMIQ                  RF D NFKL H   G LSMANAG  +NGS FFITTV
Sbjct: 81  PNFMIQGGDITKGDGTGGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTV 140

Query: 660 XXPWLDGXXVVFGKVXKXWXL 722
             PWLDG  VVFG+V   + +
Sbjct: 141 KTPWLDGHHVVFGEVLSGYDI 161


>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score =  109 bits (261), Expect = 7e-25
 Identities = 59/125 (47%), Positives = 63/125 (50%)
 Frame = +3

Query: 330 FDXXXGXXXXGTXVXGLFGKXVPKTTEXFFQLAXKPEGXGYXGXXFHRVIKNFMIQXXXX 509
           FD        G  V  LF   VPKT   F  L    +G GY G  FHRVI  FM+Q    
Sbjct: 6   FDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHRVIPQFMLQGGDF 65

Query: 510 XXXXXXXXXXXXXXRFEDXNFKLKHYGAGWLSMANAGXXTNGSXFFITTVXXPWLDGXXV 689
                         +F D NF LKH   G LSMANAG  TNGS FFITTV  PWLDG  V
Sbjct: 66  TRGNGTGGKSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHV 125

Query: 690 VFGKV 704
           VFG+V
Sbjct: 126 VFGEV 130


>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 97.9 bits (233), Expect = 2e-21
 Identities = 57/113 (50%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
 Frame = +3

Query: 378 LFGKXVPKTTEXFFQLAXKPEGXG----YXGXXFHRVIKNFMIQXXXXXXXXXXXXXXXX 545
           LF   VPKT + F  L    E  G    Y G  FHRVIKNFM+Q                
Sbjct: 23  LFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNFMLQGGDFTRGNGTGGESIY 82

Query: 546 XXRFEDXNFKLKHYGAGWLSMANAGXXTNGSXFFITTVXXPWLDGXXVVFGKV 704
             +FED NF+LKH     LSMANAG  TNGS FFITTV  P LDG  VVFGKV
Sbjct: 83  GEKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGKV 135


>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 85.0 bits (201), Expect = 1e-17
 Identities = 52/122 (42%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
 Frame = +3

Query: 378 LFGKXVPKTTEXFFQ------LAXKPEGXGYXGXXFHRVIKNFMIQXXXXXXXXXXXXXX 539
           LF   VPKT E F Q      L    +  GY    FHR+I+ FMIQ              
Sbjct: 25  LFSSIVPKTAENFRQFCTGETLGVNQKPIGYKNSTFHRIIQGFMIQGGDFVSGDGTGSAT 84

Query: 540 XXXXR-FEDXNFKLKHYGAGWLSMANAGXXTNGSXFFITTVXXPWLDGXXVVFGKVXKXW 716
               R F D NF LKH   G LSMANAG  +NG  FFITTV   +LDG  VVFG+V + +
Sbjct: 85  IFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITTVPCDFLDGKHVVFGEVIEGY 144

Query: 717 XL 722
            +
Sbjct: 145 DI 146


>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 81.8 bits (193), Expect = 1e-16
 Identities = 47/115 (40%), Positives = 59/115 (51%)
 Frame = +3

Query: 360 GTXVXGLFGKXVPKTTEXFFQLAXKPEGXGYXGXXFHRVIKNFMIQXXXXXXXXXXXXXX 539
           G  +  L+ +  PKT + F+ LA   EG  Y G  FHRVI +F+IQ              
Sbjct: 11  GKILIELYTEHAPKTCQNFYTLAK--EGY-YDGVIFHRVIPDFVIQGGDPTGTGRGGTSI 67

Query: 540 XXXXRFEDXNFKLKHYGAGWLSMANAGXXTNGSXFFITTVXXPWLDGXXVVFGKV 704
                 ++ +  L H GAG LSMANAG  TN S FFIT    PWLDG   +FG+V
Sbjct: 68  YGDKFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPWLDGKHTIFGRV 122


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 68.5 bits (160), Expect = 1e-12
 Identities = 40/108 (37%), Positives = 51/108 (47%)
 Frame = +3

Query: 378 LFGKXVPKTTEXFFQLAXKPEGXGYXGXXFHRVIKNFMIQXXXXXXXXXXXXXXXXXXRF 557
           L+ +  PK  + F   A   E   Y    FHR+IKNFMIQ                    
Sbjct: 470 LYPEEAPKAVQNFTTHA---ENGYYDNTIFHRIIKNFMIQGGDPLGDGTGGESIWKKDFE 526

Query: 558 EDXNFKLKHYGAGWLSMANAGXXTNGSXFFITTVXXPWLDGXXVVFGK 701
           ++ +  LKH     +SMAN+G  TNGS FFITT   PWLDG   +F +
Sbjct: 527 DEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPWLDGKHTIFAR 574


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 36/103 (34%), Positives = 42/103 (40%)
 Frame = +3

Query: 396 PKTTEXFFQLAXKPEGXGYXGXXFHRVIKNFMIQXXXXXXXXXXXXXXXXXXRFEDXNFK 575
           P     F QLA   +G  Y    FHR I  FMIQ                    ++    
Sbjct: 297 PHAVYNFVQLAK--QGY-YRNTIFHRNIARFMIQGGDPSGTGRGGQSIWGKPFKDEFCNP 353

Query: 576 LKHYGAGWLSMANAGXXTNGSXFFITTVXXPWLDGXXVVFGKV 704
           LKH   G +SMAN G  TNGS FFI       LD    +FG+V
Sbjct: 354 LKHDDRGIISMANRGKNTNGSQFFILYGPAKHLDNKHTIFGRV 396


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 42.7 bits (96), Expect = 7e-05
 Identities = 33/109 (30%), Positives = 44/109 (40%)
 Frame = +3

Query: 378 LFGKXVPKTTEXFFQLAXKPEGXGYXGXXFHRVIKNFMIQXXXXXXXXXXXXXXXXXXRF 557
           L+ K VPK    F QL    EG  Y G   HRV+  F+IQ                    
Sbjct: 28  LWCKEVPKACRNFIQLCL--EGY-YDGTIVHRVVPEFLIQGGDPTGTGMGGESIYGEPFA 84

Query: 558 EDXNFKLKHYGAGWLSMANAGXXTNGSXFFITTVXXPWLDGXXVVFGKV 704
            + + +L+    G + MA      N S FFIT    P  +G   +FG+V
Sbjct: 85  VETHPRLRFIRRGLVGMACTENEGNNSQFFITLGPTPEWNGKQTLFGRV 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,678,020
Number of Sequences: 5004
Number of extensions: 16741
Number of successful extensions: 33
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)