Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L23
         (898 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)             132   4e-31
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)             111   7e-25
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)              109   4e-24
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)             104   1e-22
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         58   7e-09
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)         56   4e-08
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)         54   2e-07
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   2e-07
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)          50   2e-06
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.011
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         36   0.044

>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score =  132 bits (319), Expect = 4e-31
 Identities = 69/148 (46%), Positives = 76/148 (51%)
 Frame = +3

Query: 261 LLFXASAXSDXXPKGPKVTXKVXFDXXXGXXXXGTXVXGLFGKXVPKTTEXFFQLAXKPE 440
           L+F A   +D       VT KV  D   G    G  + GLFG   PKT   F  LA K +
Sbjct: 8   LVFVAFVNADTETTA-SVTKKVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQ 66

Query: 441 GXGYXGXXFHRVIKNFMIQXXXXXXXXXXXXXXXXXXRFEDXNFKLKHYGAGWLSMANAG 620
           G GY    FHRVIKNFMIQ                   F+D NF LKHYG GWL MANAG
Sbjct: 67  GFGYKDSIFHRVIKNFMIQGGDFTNKDGTGGYSIYGKYFDDENFNLKHYGPGWLCMANAG 126

Query: 621 XXTNGSXFFITTVXXPWLDGXXVVFGKV 704
             TNGS F+ITT+   WLDG    FGKV
Sbjct: 127 KNTNGSQFYITTIKTSWLDGSHTCFGKV 154


>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score =  111 bits (267), Expect = 7e-25
 Identities = 53/91 (58%), Positives = 58/91 (63%)
 Frame = +3

Query: 438 EGXGYXGXXFHRVIKNFMIQXXXXXXXXXXXXXXXXXXRFEDXNFKLKHYGAGWLSMANA 617
           +G GY    FHRVI++FMIQ                  +F D NFKL+HYGAGWLSMANA
Sbjct: 85  KGFGYKNSIFHRVIQDFMIQGGDFTKGDGTGGKSIYGQKFADENFKLQHYGAGWLSMANA 144

Query: 618 GXXTNGSXFFITTVXXPWLDGXXVVFGKVXK 710
           G  TNGS FFITTV  PWLDG  VVFGKV K
Sbjct: 145 GKDTNGSQFFITTVKTPWLDGRHVVFGKVLK 175


>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score =  109 bits (261), Expect = 4e-24
 Identities = 59/132 (44%), Positives = 66/132 (50%)
 Frame = +3

Query: 309 KVTXKVXFDXXXGXXXXGTXVXGLFGKXVPKTTEXFFQLAXKPEGXGYXGXXFHRVIKNF 488
           +V  +V FD   G    G  V  L    VP T E F  L    +G GY G  FHR+I  F
Sbjct: 134 RVNPRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQF 193

Query: 489 MIQXXXXXXXXXXXXXXXXXXRFEDXNFKLKHYGAGWLSMANAGXXTNGSXFFITTVXXP 668
           M Q                  +FED NF LKH GAG LSMAN+G  TNGS FF+TT    
Sbjct: 194 MCQGGDFTKHNGTGGKSIYGAKFEDENFVLKHTGAGVLSMANSGPNTNGSQFFLTTEKTD 253

Query: 669 WLDGXXVVFGKV 704
           WLDG  VVFG V
Sbjct: 254 WLDGKHVVFGNV 265


>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score =  104 bits (249), Expect = 1e-22
 Identities = 60/133 (45%), Positives = 63/133 (47%)
 Frame = +3

Query: 306 PKVTXKVXFDXXXGXXXXGTXVXGLFGKXVPKTTEXFFQLAXKPEGXGYXGXXFHRVIKN 485
           PK T    FD   G    G  V  L    VPKT E F  L    +G GY G  FHRVI  
Sbjct: 2   PKTTY---FDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPG 58

Query: 486 FMIQXXXXXXXXXXXXXXXXXXRFEDXNFKLKHYGAGWLSMANAGXXTNGSXFFITTVXX 665
           FM Q                  +F D NF LKH G G LSMANAG  TNGS FF+ T   
Sbjct: 59  FMCQGGDFTRGDGTGGKSIYGAKFADENFNLKHTGPGILSMANAGPGTNGSQFFLCTAKT 118

Query: 666 PWLDGXXVVFGKV 704
            WLDG  VVFG V
Sbjct: 119 SWLDGKHVVFGSV 131


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 58.4 bits (135), Expect = 7e-09
 Identities = 29/44 (65%), Positives = 31/44 (70%)
 Frame = +3

Query: 579 KHYGAGWLSMANAGXXTNGSXFFITTVXXPWLDGXXVVFGKVXK 710
           +H   G LSMAN+G  TNGS FFITTV  P LDG  VVFGKV K
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFGKVLK 231


>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
          Length = 99

 Score = 56.0 bits (129), Expect = 4e-08
 Identities = 29/53 (54%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
 Frame = +3

Query: 555 FEDXNFK-LKHYGAGWLSMANAGXXTNGSXFFITTVXXPWLDGXXVVFGKVXK 710
           FED   + L+H     +SMANAG  TNGS FFIT V  PWLD    VFG+V K
Sbjct: 14  FEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKHTVFGRVVK 66


>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
          Length = 145

 Score = 54.0 bits (124), Expect = 2e-07
 Identities = 24/50 (48%), Positives = 30/50 (60%)
 Frame = +3

Query: 555 FEDXNFKLKHYGAGWLSMANAGXXTNGSXFFITTVXXPWLDGXXVVFGKV 704
           FED +F + H   G + MAN G  TNGS F+IT    PW+D   V FG+V
Sbjct: 57  FEDEDFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAPWMDTKYVAFGQV 106


>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 54.0 bits (124), Expect = 2e-07
 Identities = 25/33 (75%), Positives = 25/33 (75%)
 Frame = +3

Query: 606 MANAGXXTNGSXFFITTVXXPWLDGXXVVFGKV 704
           MANAG  TNGS FFITTV   WLDG  VVFGKV
Sbjct: 1   MANAGKDTNGSQFFITTVKTSWLDGKHVVFGKV 33


>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
          Length = 49

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 23/35 (65%), Positives = 24/35 (68%)
 Frame = +3

Query: 600 LSMANAGXXTNGSXFFITTVXXPWLDGXXVVFGKV 704
           LSMANAG  TNGS FF+ T    WLDG  VVFG V
Sbjct: 3   LSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSV 37


>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 37.9 bits (84), Expect = 0.011
 Identities = 19/43 (44%), Positives = 23/43 (53%)
 Frame = +3

Query: 573 KLKHYGAGWLSMANAGXXTNGSXFFITTVXXPWLDGXXVVFGK 701
           +  H   G +SMAN G  +NGS FFI     P LD    +FGK
Sbjct: 298 RCNHNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKYTMFGK 340


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 35.9 bits (79), Expect = 0.044
 Identities = 19/35 (54%), Positives = 20/35 (57%)
 Frame = +3

Query: 555 FEDXNFKLKHYGAGWLSMANAGXXTNGSXFFITTV 659
           F D  F+ KH     LSMAN G  TNGS FFI  V
Sbjct: 37  FGDECFEFKHERPMLLSMANRGPNTNGSQFFIIHV 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,654,036
Number of Sequences: 59808
Number of extensions: 123092
Number of successful extensions: 102
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)