Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L22
         (888 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48091| Best HMM Match : Coronavirus_5 (HMM E-Value=7.4)             30   2.9  
SB_10274| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_42510| Best HMM Match : MMR_HSR1 (HMM E-Value=5.3e-05)              28   8.8  

>SB_48091| Best HMM Match : Coronavirus_5 (HMM E-Value=7.4)
          Length = 141

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = +2

Query: 308 VVEQSEIER*SFKKKYHRKDVIVRPKREIEKQG----ILLSRQDKNTAEISTIVSQTYKH 475
           V E + + R + K+ +   DV V+PKR+  K G     L  R DKN +E+        K 
Sbjct: 23  VCENNSVGRYTKKRDFREGDVDVKPKRQRRKGGDAIEFLKERADKN-SELREKELNMKKE 81

Query: 476 EYLQKLIEQWKNS 514
              Q+L  Q KN+
Sbjct: 82  MQQQQLQLQQKNT 94


>SB_10274| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 844

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = +2

Query: 365 DVIVRPKREIEKQGILLSRQDKNTAEISTIVSQTYKHEYLQKLIEQWKNSLEF 523
           +++VR K E+ K   L   + K+   ++TIV+   +  Y + +  +WKN ++F
Sbjct: 400 NILVRDKEEVSKDNSL---KIKDALHLNTIVAVFDQALYAKAIEIKWKNKVKF 449


>SB_42510| Best HMM Match : MMR_HSR1 (HMM E-Value=5.3e-05)
          Length = 202

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +2

Query: 383 KREIEKQGILLSRQDKNTAE-ISTIVSQTYKHEYLQKLIE 499
           KR++ K+  +LS   K +A+ +S IV    +HE+LQ  IE
Sbjct: 127 KRKVPKKYAVLSDAAKESADNLSAIVEVGVEHEFLQSGIE 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,599,080
Number of Sequences: 59808
Number of extensions: 340374
Number of successful extensions: 784
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)