Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L22
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine re...    31   0.83 
Z92831-6|CAB07365.2|  355|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z92777-12|CAJ58496.1|  355|Caenorhabditis elegans Hypothetical p...    29   5.9  
Z83216-3|CAB05674.2|  232|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z46795-6|CAE48511.2|  838|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z46792-8|CAE48495.2|  838|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine
           receptor, class x protein104 protein.
          Length = 279

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
 Frame = -1

Query: 429 LSWRLSSXPCFSISLXGLTITSFL*YFFLKLYRS--ISLCSTTTL--YLILFVFL 277
           ++ RL       +S  G+ I  ++ YFFLKL ++    LCS+ T+   +ILF +L
Sbjct: 6   IATRLVGAHMLLVSFCGILINFYMFYFFLKLQKTSFYVLCSSKTISNSIILFAYL 60


>Z92831-6|CAB07365.2|  355|Caenorhabditis elegans Hypothetical
           protein F22G12.1 protein.
          Length = 355

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +2

Query: 272 NQRKTNKIR*SVVVEQSE-IER*SFKKKYHRKDVIVRPKREIEKQGILLSRQDKNTAEI 445
           N+   N+++  +V EQ++ +ER + K++ HR+D++   K  + ++     R +K   E+
Sbjct: 24  NRESINELQNKIVNEQTQHVERIAQKEENHRQDMLQNFKSSLAERKAAEERHNKAIEEL 82


>Z92777-12|CAJ58496.1|  355|Caenorhabditis elegans Hypothetical
           protein F22G12.1 protein.
          Length = 355

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +2

Query: 272 NQRKTNKIR*SVVVEQSE-IER*SFKKKYHRKDVIVRPKREIEKQGILLSRQDKNTAEI 445
           N+   N+++  +V EQ++ +ER + K++ HR+D++   K  + ++     R +K   E+
Sbjct: 24  NRESINELQNKIVNEQTQHVERIAQKEENHRQDMLQNFKSSLAERKAAEERHNKAIEEL 82


>Z83216-3|CAB05674.2|  232|Caenorhabditis elegans Hypothetical
           protein C08F11.3 protein.
          Length = 232

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -3

Query: 481 IFMFICLRYYCRYFCCIFVLAAKQYXLFLYFSLXSHN 371
           IFMFI    +   FCCI  L    +  F YF   S N
Sbjct: 85  IFMFIGPSEFLTVFCCILFLPVTLHMRFEYFYKKSVN 121


>Z46795-6|CAE48511.2|  838|Caenorhabditis elegans Hypothetical
           protein C52A11.4b protein.
          Length = 838

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 559 HLVSSVSKVLRQRTKDXLHLLPCWRCL-IISRLXTYSAQKSFLLLSFRL 702
           HL+  VS+ LR ++ +  H L  W C+ ++  L   S    F ++ +++
Sbjct: 787 HLLQRVSRRLRSKSLENFHGLAVWNCVPLVIHLCKDSRGLGFSIVDYKV 835


>Z46792-8|CAE48495.2|  838|Caenorhabditis elegans Hypothetical
           protein C52A11.4b protein.
          Length = 838

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 559 HLVSSVSKVLRQRTKDXLHLLPCWRCL-IISRLXTYSAQKSFLLLSFRL 702
           HL+  VS+ LR ++ +  H L  W C+ ++  L   S    F ++ +++
Sbjct: 787 HLLQRVSRRLRSKSLENFHGLAVWNCVPLVIHLCKDSRGLGFSIVDYKV 835


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,700,488
Number of Sequences: 27780
Number of extensions: 269158
Number of successful extensions: 806
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)