Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L22
         (888 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36830.1 68417.m05223 GNS1/SUR4 membrane family protein weak ...    28   7.2  
At1g31840.1 68414.m03912 pentatricopeptide (PPR) repeat-containi...    28   9.5  

>At4g36830.1 68417.m05223 GNS1/SUR4 membrane family protein weak
           similarity to long chain polyunsaturated fatty acid
           elongation enzyme [Isochrysis galbana] GI:17226123;
           contains Pfam profile PF01151: GNS1/SUR4 family
          Length = 289

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = -1

Query: 444 ISAVFLSWRLSSXPCFSISLXGLTITSFL*YFFLKLYRSISLCSTTTLYLILF 286
           I AV  S RL+    F  S+  +  TSFL   F + Y+ +++ STT +Y +++
Sbjct: 148 IFAVLRSRRLAVSQLFCNSV--MAFTSFLWLEFSQSYQILAILSTTLVYSVVY 198


>At1g31840.1 68414.m03912 pentatricopeptide (PPR) repeat-containing
           protein contains multiple PPR domains: Pfam profile:
           PF01535: PPR repeat
          Length = 690

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 632 LQQGNK*SXSFVLCRSTLLTELTKCHRVTNTSPYF 528
           L Q NK S    +C + ++  L KCHR+ + S +F
Sbjct: 591 LMQRNKISADIAVC-NVVIHLLFKCHRIEDASKFF 624


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,631,671
Number of Sequences: 28952
Number of extensions: 243045
Number of successful extensions: 517
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)