Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L20
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    32   0.12 
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    29   1.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.9  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   3.4  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   4.5  

>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
 Frame = +1

Query: 469 VNSEGSWVYEKDVLKITFPLKQ-KQPEDSKRPVAEPTETTPTNVSREEME-FTTESXV-R 639
           VNS G+   E   +   F ++  ++ E+ K  +  P    P   S+EE E       + R
Sbjct: 323 VNSPGALSVEATYINQNFCVQALRETEEEKYKLPHPN---PFYNSKEESEPLAAHGYIYR 379

Query: 640 DVDVGLETAQKTNEIAKAVXAXTYAVNIRDDAEFLPI 750
           DVD+ LET +K  ++        Y  N  +D +++ I
Sbjct: 380 DVDLSLETDEKPVKLMVRTEVDGYVKNPANDVQYISI 416


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -2

Query: 722 MLTAYVXAXTAFAI--SLVFWAVSKPTSTSRTXLSVVNSISSRLTFVGVVSVGSATGLLL 549
           ++ + V A  +F +  + V+WA+   T      L++++S+    T    +SV +A GLLL
Sbjct: 70  IILSIVSAALSFYLDTNAVWWAIRTITHLEIVGLNILSSLKYGSTLFSWISVANAFGLLL 129


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 22/65 (33%), Positives = 32/65 (49%)
 Frame = -2

Query: 737 SASSLMLTAYVXAXTAFAISLVFWAVSKPTSTSRTXLSVVNSISSRLTFVGVVSVGSATG 558
           S+SS   TA   + ++  IS    + S PTSTS T  S  +S SS  +    +S  S++ 
Sbjct: 255 SSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSS 314

Query: 557 LLLSS 543
              SS
Sbjct: 315 SSFSS 319


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = -2

Query: 737 SASSLMLTAYVXAXTAFAISLVFWAVSKP-----TSTSRTXLSVVNS-ISSRLTFVGVVS 576
           SASS  LT+     T  A S    +VS       TSTS T LS VNS  ++  +   + S
Sbjct: 302 SASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTS 361

Query: 575 VGSATGLLLSS 543
           V S T    SS
Sbjct: 362 VNSTTATSASS 372


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +1

Query: 217 DTHSLWSNLANEMQHLDXMMKELSLKFPSIINEGRVEGDKYQISIHLPGYEQKDINVKAK 396
           + + +W+++  +MQ  D   ++L   F  I N G++     Q +I L G +  ++  K  
Sbjct: 108 NVNEVWNDITEDMQSQDFSTEDLKQLFLLIFNNGKLR-TLLQNAIVLLGQQTTNVASKKL 166

Query: 397 N 399
           N
Sbjct: 167 N 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,135
Number of Sequences: 5004
Number of extensions: 57057
Number of successful extensions: 167
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)