Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_L20
(852 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0659 - 5021159-5021266,5021364-5021494,5021619-5021785,502... 33 0.29
08_02_1129 - 24513568-24514296,24515380-24515817 30 2.0
11_06_0645 - 25814302-25814759,25814853-25815005,25815032-258152... 29 3.6
05_03_0024 - 7459352-7459765 29 4.7
01_06_0794 + 32050413-32050523,32050663-32051391 29 4.7
03_06_0061 + 31352703-31353037,31353145-31353274,31353708-313539... 29 6.2
01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081... 29 6.2
12_02_0031 - 12477787-12478413,12480182-12480268,12480371-124805... 28 8.2
08_02_0311 - 15635165-15635590,15635777-15638698 28 8.2
04_04_0347 + 24564589-24565296 28 8.2
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 28 8.2
>01_01_0659 -
5021159-5021266,5021364-5021494,5021619-5021785,
5021950-5022065,5022226-5022381,5022570-5022678,
5023153-5023262,5023807-5023992,5024077-5024667
Length = 557
Score = 33.1 bits (72), Expect = 0.29
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 292 KFPSIINEGRVEGDKYQISIHLPGYEQKDINVK 390
K ++ E +VEGD Y + +H PG+ K ++V+
Sbjct: 216 KDDEVVKEEKVEGDGYSLGLHAPGFFDKVLHVE 248
>08_02_1129 - 24513568-24514296,24515380-24515817
Length = 388
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -3
Query: 673 SSGLSPSRRQRPARCSRW*TPSLHDLHS*GSSQWALQLASC 551
+S +SP QR A CSRW PS L + + A+QL C
Sbjct: 259 ASAVSPPAEQRAACCSRWWVPSSLSLVASLALAAAVQLRVC 299
>11_06_0645 -
25814302-25814759,25814853-25815005,25815032-25815214,
25815342-25815531,25815624-25815784,25816136-25816623,
25817035-25817075
Length = 557
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 304 IINEGRVEGDKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLP 462
I ++G++EG + I H+P E D+ V + + + +S H K N P
Sbjct: 351 ISSKGQLEGIQVVIDPHVPSVESVDMPVSSMDNSTLEVFSSQQQHSFKCNNTP 403
>05_03_0024 - 7459352-7459765
Length = 137
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 174 GDTANVTSHGSTVARPRPPPAGRTNTKA 91
GD + + H S V R P P+GRT T A
Sbjct: 35 GDVSALRLHASRVGRRPPDPSGRTATSA 62
>01_06_0794 + 32050413-32050523,32050663-32051391
Length = 279
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +3
Query: 66 CLHAPRACSP*CLCGLLAAVSAAPQYXHGSSHWP 167
C HAP C P CG A S+ P + G WP
Sbjct: 107 CPHAPCFC-PEPGCGFAGATSSLPAHFTGGHGWP 139
>03_06_0061 +
31352703-31353037,31353145-31353274,31353708-31353902,
31354696-31354725,31355238-31355395,31355756-31355846,
31355924-31355989,31356331-31356413,31356495-31356558,
31356641-31356709,31356798-31356833
Length = 418
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +3
Query: 39 LSFCVSFXRCLHAPRACSP*CLCGLLAAVSAAPQYXHGSSHWPYHHYA 182
+++C + R L P A +P L LL + +AAP+Y H P+HH++
Sbjct: 1 MAWCAARSRLL--PLATAPQLLRRLLLSSAAAPRYAH-----PHHHHS 41
>01_06_0556 + 30207124-30207581,30207692-30207901,30208016-30208100,
30208517-30208676,30208768-30208844,30208985-30209032,
30209504-30209594,30209703-30210004,30210214-30210495,
30210695-30211011,30211113-30211273,30211556-30211665,
30211752-30211902,30212438-30212578,30212688-30212857,
30213485-30213817,30213981-30214271,30214356-30214439,
30214620-30214753,30214946-30215173,30215273-30215444,
30215621-30215875,30215963-30216232
Length = 1509
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -2
Query: 695 TAFAISLVFWAVSKPTSTSRTXLSVVNSISSRLTFVG 585
TA + +FW V +S+ L ++ S+ + + FVG
Sbjct: 1263 TALMLGTIFWRVGHKMESSKDLLVIIGSMYAAVLFVG 1299
>12_02_0031 -
12477787-12478413,12480182-12480268,12480371-12480562,
12480638-12480766,12480840-12480926,12483076-12483537,
12485088-12485222
Length = 572
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +3
Query: 135 PQYXHGSSHWPYHHYAPXQSLRSGKHVGHTFALVQPCQRNATLGRHDEGAVVEVPQHYKR 314
P + + + +H YA Q + VG TFA Q NAT+ H ++V Y +
Sbjct: 474 PVWKYPCYYISFHKYA-VQGFYKNEFVGQTFASDQLIMANATITGHQVLEALQVEMWYSK 532
>08_02_0311 - 15635165-15635590,15635777-15638698
Length = 1115
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = +3
Query: 156 SHWPYHHYAPXQSLRSGKHVGHTFALVQPCQRNATLGRHDEGAVVE 293
SHWP A G H G +++P + G HD+ +++
Sbjct: 542 SHWPGTWAASAPDHAKGNHAGILQVMLKPPSPDPLYGMHDDDQMID 587
>04_04_0347 + 24564589-24565296
Length = 235
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 111 LLAAVSAAPQYXHGSSHWPY-HHYAP 185
LLAA SAA H ++ PY HH+AP
Sbjct: 13 LLAAASAARADHHSPAYAPYPHHHAP 38
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 535 KQPEDSKRPVAEPTETTPTNVSREEMEFTTESXVRD 642
+QP SKRP AE T TT + ++ +E ++ VRD
Sbjct: 696 EQPHRSKRPWAETTTTTTSGRDQDHLEALYDA-VRD 730
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,322,626
Number of Sequences: 37544
Number of extensions: 418092
Number of successful extensions: 1419
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1418
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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