Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L20
         (852 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51968| Best HMM Match : PT (HMM E-Value=0.54)                       34   0.17 
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.6  
SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)                   30   2.1  
SB_29910| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-06)                 29   4.8  
SB_10507| Best HMM Match : 7tm_1 (HMM E-Value=7.9e-09)                 29   6.3  
SB_25011| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_21071| Best HMM Match : efhand (HMM E-Value=0.48)                   28   8.4  

>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
          Length = 514

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +1

Query: 499 KDVLKITFPLKQKQPEDSKRPVAEPTETTPTNVSREEMEFTTESXVR 639
           K   K   P ++++ E+ +RP  +PT+  PT + R   E  T+   +
Sbjct: 427 KKTTKPLLPEEEEEEEEEERPTPKPTKAKPTTIKRRPTEIPTKKPTK 473



 Score = 32.7 bits (71), Expect = 0.39
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +1

Query: 496 EKDVLKITFPL-KQKQPEDSKRPVAEPTETTPTNVSREEMEFTTESXVRDVDVGLETAQK 672
           E+   K T PL  + +PE+ +R    PT+  PT + R   E  T+   + +   +E+A++
Sbjct: 343 ERPTKKPTKPLLPEVEPEEEERATPRPTKAKPTTIKRRPTERPTKKPTKPLLPEVESAEE 402



 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 496 EKDVLKITFPL-KQKQPEDSKRPVAEPTETTPTNVSREEMEFTTESXVR 639
           E+   K T PL  + +PE+ +R    PT+  PT + R   E  T+   +
Sbjct: 180 ERPTKKPTKPLLPEVEPEEEERATPRPTKAKPTTMKRRPTERPTKKPTK 228



 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 496 EKDVLKITFPL-KQKQPEDSKRPVAEPTETTPTNVSREEMEFTTESXVR 639
           E+   K T PL  + +PE+ ++    PT+  PT + R   E  T+   +
Sbjct: 220 ERPTKKPTKPLLPEVEPEEEEKATPRPTKAKPTTIKRRPTERPTKKPTK 268


>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 192 TEXGRNGDTANVTSHGSTVARPRPPPAGRTNTKASXRV 79
           T   R+G+ +N T H       +PPP+ + N+ +S R+
Sbjct: 668 TSSRRHGNNSNTTLHTLAPTTHKPPPSNQHNSSSSHRI 705


>SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)
          Length = 309

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +2

Query: 125 LGRATVLPWLVTLAVSPLRPXSVLTFGXACWTHIRFGPTLPT 250
           L ++TVL  + T  ++ L   SVL FG    T +RFG T P+
Sbjct: 104 LMKSTVLSVIDTYGINKLH-YSVLPFGSTASTAVRFGDTFPS 144


>SB_29910| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-06)
          Length = 251

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -2

Query: 683 ISLVFWAVSKPTSTSRTXLSVVNSISSRLTFVGVVSVGSATGLLL 549
           I  V WA S     SR     V+S    +  +GV+SV +   L L
Sbjct: 135 ILTVLWATSSTIGLSRIAFQTVHSYRKAIGIIGVISVSTTMCLYL 179


>SB_10507| Best HMM Match : 7tm_1 (HMM E-Value=7.9e-09)
          Length = 386

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = -1

Query: 228 RMCVQHAXPNVRTEXGRNGDTANVTSHGSTVARPRPPPAGRTNTKAS 88
           R  V+    NVR   G  G      S G  +   RPPP   +N+  S
Sbjct: 242 RNAVRETLENVRELIGLTGSNVKALSPGDPLVLERPPPRWSSNSPYS 288


>SB_25011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1018

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 204 PNVRTEXGRNGDTANVTSHGSTVARPRPPPA-GRTNTKA 91
           PNV +    N   +NV+S+G+    P P P+ G +N  A
Sbjct: 547 PNVSSNASNNNALSNVSSNGTLAISPEPLPSNGSSNAIA 585


>SB_21071| Best HMM Match : efhand (HMM E-Value=0.48)
          Length = 151

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 466 DVNSEGSWVYEKDVLKITFPLKQKQPEDSK--RPVAEPTE 579
           DVN +G  VY KD L+  F L  K  +DSK  RP  +PT+
Sbjct: 112 DVNGKGRIVY-KDFLR-HFVLAMKPQDDSKLIRPKLQPTK 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,901,190
Number of Sequences: 59808
Number of extensions: 457049
Number of successful extensions: 1608
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1607
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)