Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L20
         (852 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12200.1 68416.m01521 protein kinase family protein contains ...    32   0.42 
At2g29940.1 68415.m03642 ABC transporter family protein similar ...    30   1.7  
At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containi...    29   3.0  
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa...    29   3.9  
At2g37280.1 68415.m04573 ABC transporter family protein similar ...    29   3.9  
At5g55540.1 68418.m06919 expressed protein                             28   6.9  
At1g22060.1 68414.m02759 expressed protein                             28   6.9  
At5g24740.1 68418.m02920 expressed protein                             28   9.1  
At5g12970.1 68418.m01487 C2 domain-containing protein contains I...    28   9.1  
At1g76100.1 68414.m08837 plastocyanin identical to plastocyanin ...    28   9.1  
At1g52560.1 68414.m05933 26.5 kDa class I small heat shock prote...    28   9.1  

>At3g12200.1 68416.m01521 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 571

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
 Frame = +1

Query: 502 DVLKITFPLKQKQPEDSKRP-VAEPTETTPT--NVSREEME--FTTESXVRDVDVGLETA 666
           D LKI+    QK  E    P +A  +  TP   N   +E E  F+ ES +RDVDVG+ +A
Sbjct: 369 DTLKISEFTSQKSDESLIDPDIAVYSTETPAEENALPKETENIFSEESQLRDVDVGVVSA 428

Query: 667 QK 672
           Q+
Sbjct: 429 QE 430


>At2g29940.1 68415.m03642 ABC transporter family protein similar to
            ABC1 protein GI:14331118 from [Nicotiana plumbaginifolia]
          Length = 1426

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -2

Query: 692  AFAISLVFWAVSKPTSTSRTXLSVVNSISSRLTFVGVVSVGS 567
            AF +  VFW +    ++S+  ++V+ ++ S   F+GV +  S
Sbjct: 1182 AFILGTVFWDIGSKRTSSQDLITVMGALYSACLFLGVSNASS 1223


>At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containing
            protein low similarity to SP|P46825 Kinesin light chain
            (KLC) {Loligo pealeii}; contains Pfam profile PF00515:
            TPR Domain
          Length = 1797

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/61 (31%), Positives = 25/61 (40%)
 Frame = +1

Query: 514  ITFPLKQKQPEDSKRPVAEPTETTPTNVSREEMEFTTESXVRDVDVGLETAQKTNEIAKA 693
            + FP      E     V EPT   PT++    +E T E   +DV V  E     N +  A
Sbjct: 1671 VEFPPPHMITEPIAATVLEPTVILPTDIDTSGVEETKEG-TQDVAVADEVMDSVNHVNNA 1729

Query: 694  V 696
            V
Sbjct: 1730 V 1730


>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
           putative ATP-dependent helicases
          Length = 1058

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/98 (20%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
 Frame = +1

Query: 322 VEGDKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLPWDVNSEGSWVYEK 501
           + G+   + +   G   +D+    K+      ++S F+ Y+K + L  D       + + 
Sbjct: 20  INGESTTVQVSSDG-TIRDLKKALKSCFPPASSSSNFHLYIKGEKLKLDTRVAAITINDG 78

Query: 502 DVLKITFPLKQKQPEDSKRP-VAEPTE-TTPTNVSREE 609
           D+L + FP K+K+   + +P +++P+  ++ T+  ++E
Sbjct: 79  DILGL-FPFKKKELRQTPKPDLSKPSSLSSRTSTMKDE 115


>At2g37280.1 68415.m04573 ABC transporter family protein similar to
            PDR5-like ABC transporter GI:1514643 from [Spirodela
            polyrhiza]
          Length = 1413

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 695  TAFAISLVFWAVSKPTSTSRTXLSVVNSISSRLTFVGVVSVGSA 564
            ++F   L+FW   K   T +   +V+ +I   + FVG+ +  SA
Sbjct: 1168 SSFIFGLLFWNQGKKIDTQQNLFTVLGAIYGLVLFVGINNCTSA 1211


>At5g55540.1 68418.m06919 expressed protein
          Length = 1380

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 265 DXMMKELSLKFPSIINEGRVEGDKYQISIH 354
           D    + SL  PSI+ EGR +  K+QI+ H
Sbjct: 866 DPSSPDSSLLVPSILEEGRGKTQKWQINTH 895


>At1g22060.1 68414.m02759 expressed protein
          Length = 1999

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 211  MLDTHSLWSNLANEMQHLDXMMKELSLKFPSIINE 315
            MLDT   +S++  E++ +     +LSLKF  +  E
Sbjct: 1934 MLDTKGRYSSMETELREMHDRYSQLSLKFAEVEGE 1968


>At5g24740.1 68418.m02920 expressed protein
          Length = 3306

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +1

Query: 472  NSEGSWVYEKDVLKITFPLKQKQPEDSKRPVAEPTETTPTNVSREEM 612
            NS+G W + +D  K + P K++    S +P+ +     P+    E++
Sbjct: 3232 NSDGVWNWRQDQQKKSSPTKKRWNNPSAQPLLQTNLEFPSEEEAEDL 3278


>At5g12970.1 68418.m01487 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 769

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 297 PQHYKRRTR-GRRQVSDIYSPAWLRTERHQRESEKWSADGA 416
           PQ Y+   R GR+   ++    W+ T+  +  S+ W +D A
Sbjct: 140 PQWYRLEDRHGRKVKGELMLAVWMGTQADEAFSDAWHSDAA 180


>At1g76100.1 68414.m08837 plastocyanin identical to plastocyanin
           GI:1865683 from [Arabidopsis thaliana]
          Length = 171

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = -2

Query: 647 STSRTXLSVVNSISSRLTFVGVVSVGSATGLLLSSGCFCFSGKVIFNTSFS*TQLPSEFT 468
           STS T      ++ S L   GV++V +A  ++L+         ++ +   S   +PSEFT
Sbjct: 34  STSATRAPPKLALKSSLKDFGVIAVATAASIVLAGNAMAME-VLLGSDDGSLAFVPSEFT 92

Query: 467 -SQGRFCIFK 441
            ++G   +FK
Sbjct: 93  VAKGEKIVFK 102


>At1g52560.1 68414.m05933 26.5 kDa class I small heat shock
           protein-like (HSP26.5-P) contains Pfam profile: PF00011
           Hsp20/alpha crystallin family; identified in Scharf,
           K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 232

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 8/66 (12%), Positives = 35/66 (53%)
 Frame = +1

Query: 226 SLWSNLANEMQHLDXMMKELSLKFPSIINEGRVEGDKYQISIHLPGYEQKDINVKAKNGV 405
           ++ + L    ++++ +    ++    ++ + + + D Y++   +PG  ++D+ +   +G+
Sbjct: 99  TIGNTLIQATENMNRIFDNFNVNPFQLMGQVKEQDDCYKLRYEVPGLTKEDVKITVNDGI 158

Query: 406 LMVQAN 423
           L ++ +
Sbjct: 159 LTIKGD 164


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,693,454
Number of Sequences: 28952
Number of extensions: 311574
Number of successful extensions: 955
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)