Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L19
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    52   8e-08
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    33   0.042
SPAC20G4.04c |hus1||checkpoint clamp complex protein Hus1|Schizo...    27   2.8  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    27   3.6  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    27   4.8  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    26   6.4  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    26   8.4  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 52.4 bits (120), Expect = 8e-08
 Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
 Frame = +1

Query: 211 QFPAGKVPAFESADGKVLLTESNAIAYYVAN----ESLRGGXLATQARVWQWASWSDSEL 378
           +FP  K+P F   DG   L+E+ AIA+Y+A+     +L G     +A+V Q+ S+++SEL
Sbjct: 46  KFPLQKMPVFVGKDG-FPLSETLAIAFYLASLNKTRALNGTTAEEKAKVLQYCSFTNSEL 104

Query: 379 LPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITL 537
             A    + P +    +++Q  + A++ +       D  L ++T+LV  R+TL
Sbjct: 105 PGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTYLVGSRLTL 157


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 33.5 bits (73), Expect = 0.042
 Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
 Frame = +1

Query: 211 QFPAGKVPAFESADGKVLLTESNAIAYYVAN------ESLRGGXLATQARVWQWASWSDS 372
           +FP  K+P F  ADG  L      + Y+         E L       +A + +W  + + 
Sbjct: 46  KFPLQKLPVFIGADGFELSEVIAIVKYFYEKGKHNDKEGLGPVNEVEEAEMLKWMCFINF 105

Query: 373 ELL-PASCA-WVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITL 537
           +++ P +   WV  + G + + ++  + + +  + +LK+ +  +  RT+LV +R TL
Sbjct: 106 DIVTPQNVRPWVGMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDRTYLVGDRFTL 162


>SPAC20G4.04c |hus1||checkpoint clamp complex protein
           Hus1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 131 HHLPGLLCXSXRISSLARPTSPKPSXSSFLPE 226
           H++P  +     +S +  PT+P+P    FLP+
Sbjct: 125 HNIPVRVLSQSYVSVIKEPTAPEPDCHIFLPQ 156


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 274 SNAIAYYVANESLRGGXLATQARVWQWAS 360
           S + A Y+ NE+LR G +   +R+W  AS
Sbjct: 780 STSSAVYIKNENLRKGFVLGISRIWVSAS 808


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 326 WLPKPVSGSGHHGLTVNYCL-LPVLGSSLTLV 418
           W+P PV  SG    T+  C+ LP  G  +T V
Sbjct: 24  WVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 461 TYWPP*KYWTDIFSHAPSL 517
           TY PP  Y  D+FS APS+
Sbjct: 257 TYLPPFNYDHDVFSFAPSV 275


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 371 VNYCLLPVLGSSLTLVSCNSTNRML 445
           V + L+P LG  L + SCN+  R L
Sbjct: 259 VTHALVPELGLQLAMASCNALLRYL 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,936,874
Number of Sequences: 5004
Number of extensions: 54454
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)