Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_L19
(904 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72507-6|CAA96631.1| 398|Caenorhabditis elegans Hypothetical pr... 62 4e-10
Z72507-7|CAD56569.1| 373|Caenorhabditis elegans Hypothetical pr... 62 7e-10
Z72507-15|CAJ55245.1| 365|Caenorhabditis elegans Hypothetical p... 49 4e-06
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr... 34 0.16
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr... 34 0.16
U53333-12|AAA96165.1| 387|Caenorhabditis elegans Nuclear hormon... 29 6.0
AC024832-3|AAF59615.1| 121|Caenorhabditis elegans Hypothetical ... 28 7.9
>Z72507-6|CAA96631.1| 398|Caenorhabditis elegans Hypothetical
protein F17C11.9a protein.
Length = 398
Score = 62.5 bits (145), Expect = 4e-10
Identities = 38/109 (34%), Positives = 59/109 (54%)
Frame = +1
Query: 211 QFPAGKVPAFESADGKVLLTESNAIAYYVANESLRGGXLATQARVWQWASWSDSELLPAS 390
+FP G PAFE G LL + +I ++ S A QW +++ LLPA
Sbjct: 39 KFPLGVTPAFE---GDALLFGAESIGLHLTGTS-------ANAETVQWLQFAEGYLLPAV 88
Query: 391 CAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITL 537
+V P + F+K+ VE+ K++L L+VLD L+ +T+LV ER++L
Sbjct: 89 LGYVLPSVSAANFDKKTVEQYKNELNGQLQVLDRVLVKKTYLVGERLSL 137
Score = 61.7 bits (143), Expect = 7e-10
Identities = 32/76 (42%), Positives = 43/76 (56%)
Frame = +2
Query: 536 LADVIVFSTLLHAFQHVLXPSVRSSLINVQRWFLTVAXQPQVSAVVGSLTLCAXPPTYXP 715
LADV V LL AFQ+VL + R S++NV RWF TV QP V V+G ++L + +
Sbjct: 137 LADVSVALDLLPAFQYVLDANARKSIVNVTRWFRTVVNQPAVKEVLGEVSLASSVAQFNQ 196
Query: 716 KKYQELAGAXNKKEGK 763
K+ EL+ K K
Sbjct: 197 AKFTELSAKVAKSAPK 212
>Z72507-7|CAD56569.1| 373|Caenorhabditis elegans Hypothetical
protein F17C11.9b protein.
Length = 373
Score = 61.7 bits (143), Expect = 7e-10
Identities = 32/76 (42%), Positives = 43/76 (56%)
Frame = +2
Query: 536 LADVIVFSTLLHAFQHVLXPSVRSSLINVQRWFLTVAXQPQVSAVVGSLTLCAXPPTYXP 715
LADV V LL AFQ+VL + R S++NV RWF TV QP V V+G ++L + +
Sbjct: 112 LADVSVALDLLPAFQYVLDANARKSIVNVTRWFRTVVNQPAVKEVLGEVSLASSVAQFNQ 171
Query: 716 KKYQELAGAXNKKEGK 763
K+ EL+ K K
Sbjct: 172 AKFTELSAKVAKSAPK 187
Score = 56.0 bits (129), Expect = 3e-08
Identities = 29/89 (32%), Positives = 50/89 (56%)
Frame = +1
Query: 271 ESNAIAYYVANESLRGGXLATQARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVER 450
E +A+ + + L + A QW +++ LLPA +V P + F+K+ VE+
Sbjct: 24 EGDALLFGAESIGLHLTGTSANAETVQWLQFAEGYLLPAVLGYVLPSVSAANFDKKTVEQ 83
Query: 451 AKSDLLAALKVLDGHLLTRTFLVTERITL 537
K++L L+VLD L+ +T+LV ER++L
Sbjct: 84 YKNELNGQLQVLDRVLVKKTYLVGERLSL 112
>Z72507-15|CAJ55245.1| 365|Caenorhabditis elegans Hypothetical
protein F17C11.9c protein.
Length = 365
Score = 49.2 bits (112), Expect = 4e-06
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = +2
Query: 578 QHVLXPSVRSSLINVQRWFLTVAXQPQVSAVVGSLTLCAXPPTYXPKKYQELAGAXNKKE 757
Q+VL + R S++NV RWF TV QP V V+G ++L + + K+ EL+ K
Sbjct: 118 QYVLDANARKSIVNVTRWFRTVVNQPAVKEVLGEVSLASSVAQFNQAKFTELSAKVAKSA 177
Query: 758 GK 763
K
Sbjct: 178 PK 179
Score = 45.6 bits (103), Expect = 5e-05
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = +1
Query: 211 QFPAGKVPAFESADGKVLLTESNAIAYYVANESLRGGXLATQARVWQWASWSDSELLPAS 390
+FP G PAFE G LL + +I ++ S A QW +++ LLPA
Sbjct: 39 KFPLGVTPAFE---GDALLFGAESIGLHLTGTS-------ANAETVQWLQFAEGYLLPAV 88
Query: 391 CAWVFPYLGIMQFNKQNVERAKSDLLAALK-VLDGH 495
+V P + F+K+ VE+ K++L L+ VLD +
Sbjct: 89 LGYVLPSVSAANFDKKTVEQYKNELNGQLQYVLDAN 124
>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical
protein F25C8.3b protein.
Length = 3175
Score = 33.9 bits (74), Expect = 0.16
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +2
Query: 533 HLADVIVFS-TLLHAFQHVLXPSVRSSLINVQRWFLTVAXQPQVSAVVGSLTLCAXPPTY 709
H A + F ++ H L PS+ ++L +V RW L A P V GSL L
Sbjct: 68 HEASCVTFERVVVQNILHGLSPSLSNALASVSRWKLVRAALPHVIQCCGSLLLANVGEKK 127
Query: 710 XPKKYQEL 733
P Q++
Sbjct: 128 LPTSLQKI 135
>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical
protein F25C8.3a protein.
Length = 3184
Score = 33.9 bits (74), Expect = 0.16
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +2
Query: 533 HLADVIVFS-TLLHAFQHVLXPSVRSSLINVQRWFLTVAXQPQVSAVVGSLTLCAXPPTY 709
H A + F ++ H L PS+ ++L +V RW L A P V GSL L
Sbjct: 68 HEASCVTFERVVVQNILHGLSPSLSNALASVSRWKLVRAALPHVIQCCGSLLLANVGEKK 127
Query: 710 XPKKYQEL 733
P Q++
Sbjct: 128 LPTSLQKI 135
>U53333-12|AAA96165.1| 387|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 78 protein.
Length = 387
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 358 SWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAAL 477
S+ ++ +L A C W + + + +K+NV + KS L+ L
Sbjct: 298 SFEENAILKALCCWQTAHFKLEECDKENVRKQKSLLVQCL 337
>AC024832-3|AAF59615.1| 121|Caenorhabditis elegans Hypothetical
protein Y57E12AL.2 protein.
Length = 121
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 400 VFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTER 528
VF L ++ F +N E+ KS++LAA G TF+ T +
Sbjct: 35 VFALLAVVAFANRNPEQMKSEMLAAGVSAAGVATISTFMETHK 77
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,898,298
Number of Sequences: 27780
Number of extensions: 332526
Number of successful extensions: 833
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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