Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L17
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    31   0.30 
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    31   0.30 
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    31   0.30 
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    31   0.30 
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    27   4.8  

>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
 Frame = -3

Query: 718 IIFHTSCLKVFSHYISVFL--FGFRFCYLSVFFLISY 614
           I F+++C+ V S  +S+FL  FG+ F + +VF +I+Y
Sbjct: 264 IEFYSNCVLVQSLILSLFLISFGYFFTFFAVFSVINY 300


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
 Frame = -3

Query: 718 IIFHTSCLKVFSHYISVFL--FGFRFCYLSVFFLISY 614
           I F+++C+ V S  +S+FL  FG+ F + +VF +I+Y
Sbjct: 264 IEFYSNCVLVQSLILSLFLISFGYFFTFFAVFSVINY 300


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
 Frame = -3

Query: 718 IIFHTSCLKVFSHYISVFL--FGFRFCYLSVFFLISY 614
           I F+++C+ V S  +S+FL  FG+ F + +VF +I+Y
Sbjct: 264 IEFYSNCVLVQSLILSLFLISFGYFFTFFAVFSVINY 300


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
 Frame = -3

Query: 718 IIFHTSCLKVFSHYISVFL--FGFRFCYLSVFFLISY 614
           I F+++C+ V S  +S+FL  FG+ F + +VF +I+Y
Sbjct: 264 IEFYSNCVLVQSLILSLFLISFGYFFTFFAVFSVINY 300


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 416  QGIFLSTYVRVSRVIDWYQWWRDLRNGGK 330
            Q + + T+ R+    DWY+W   L  G K
Sbjct: 987  QFLMMKTFARLQAKGDWYEWREGLMQGIK 1015


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,159,563
Number of Sequences: 5004
Number of extensions: 62251
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)