Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L17
         (903 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)                     33   0.32 
SB_32179| Best HMM Match : DUF1409 (HMM E-Value=0.071)                 31   1.3  
SB_56568| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)                   29   6.8  

>SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 1457

 Score = 33.1 bits (72), Expect = 0.32
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +1

Query: 379 RETRTYVLKKMPCTYKR-KTELKYSLEDLKKAIDDVKTKKLSLR 507
           R+ +  +L+K    Y++ K EL+Y L+D KK  D  K +KL L+
Sbjct: 207 RKRQNEMLQKTAAMYEQDKKELQYDLDDQKKRADKEKQEKLKLK 250



 Score = 31.5 bits (68), Expect = 0.96
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +1

Query: 397 VLKKMPCTYKR-KTELKYSLEDLKKAIDDVKTKKLSLR 507
           +L+K    Y++ K EL+Y L+D KK  D  K +KL L+
Sbjct: 288 MLQKTAAMYEQDKKELQYDLDDQKKRADKEKQEKLKLK 325


>SB_32179| Best HMM Match : DUF1409 (HMM E-Value=0.071)
          Length = 429

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +1

Query: 406 KMPCTYKRKTELKYSLEDLKKAIDDVKTKKLS 501
           ++ C  KRK EL+ SLE+ K    D++TK LS
Sbjct: 395 ELDCLQKRKAELEKSLEESKDKNRDLETKVLS 426


>SB_56568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +1

Query: 364 YQSITRETRTYVLKKMPCTYKRKTELKYSLEDLKKAIDDVKTKKLSLRKHIT 519
           Y  +  +   Y  ++   T + K ELK  LEDLK + ++++ KKL L K  T
Sbjct: 127 YDDLEDKVYRYERERKSLTKENK-ELKEELEDLKISKNELEEKKLGLEKKKT 177


>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
          Length = 761

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
 Frame = +3

Query: 84  NIGSSHSSTRLV*FLLYMVLKFYL-LTIAYYLC---LPHMTNVGSP-DL-LKTYYPYLYN 245
           N+G  H S + V F++Y  L+ Y  +T  Y L    L    ++ SP DL L + +  L  
Sbjct: 549 NVGEKHQSYKQVLFIIYCFLQLYFHITSNYILIVNQLARKNSMPSPVDLVLASVFAVLVL 608

Query: 246 *GKVGETRT-LGNAEFNGFNMLERYILILFAAISEIT 353
            G VG     L    F+       Y+L+  AA   +T
Sbjct: 609 IGVVGNVLVCLVILRFSSMRTPMNYLLLNLAAADLLT 645


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,362,542
Number of Sequences: 59808
Number of extensions: 409582
Number of successful extensions: 843
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2597949818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)