Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L17
         (903 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   1.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   2.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   2.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   2.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   2.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   2.2  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   5.0  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   8.8  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +1

Query: 445 YSLEDLKKAIDDVKT 489
           YS EDL++AID+ KT
Sbjct: 312 YSDEDLREAIDEFKT 326


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -2

Query: 503 RESFLVLTSSIAFLRSSKLYFSSVFLL*VQGIFLSTYVRVSRVIDW 366
           R ++  L   + F R    YF++VF   + GI L T   ++  ++W
Sbjct: 253 RGNYSCLKVDLIFTRDRAFYFTTVF---IPGIILVTSSFITFWLEW 295


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -2

Query: 503 RESFLVLTSSIAFLRSSKLYFSSVFLL*VQGIFLSTYVRVSRVIDW 366
           R ++  L   + F R    YF++VF   + GI L T   ++  ++W
Sbjct: 304 RGNYSCLKVDLIFTRDRAFYFTTVF---IPGIILVTSSFITFWLEW 346


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -2

Query: 503 RESFLVLTSSIAFLRSSKLYFSSVFLL*VQGIFLSTYVRVSRVIDW 366
           R ++  L   + F R    YF++VF   + GI L T   ++  ++W
Sbjct: 253 RGNYSCLKVDLIFTRDRAFYFTTVF---IPGIILVTSSFITFWLEW 295


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 345 EITPPLIPVNNTGDADVR 398
           E+TPPL+ V+  G+A+ R
Sbjct: 334 EVTPPLLSVHLGGNAEFR 351


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 345 EITPPLIPVNNTGDADVR 398
           E+TPPL+ V+  G+A+ R
Sbjct: 334 EVTPPLLSVHLGGNAEFR 351


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 670 VFLFGFRFCYLSVFFLISYAS*LS 599
           +FL G  +C+  +FF+I + + +S
Sbjct: 1   MFLNGSLYCFARLFFIIGFFNAIS 24


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -1

Query: 531 WFLKCYMFTQGEFFGFNIVYSLF 463
           W+ +C  F     +   I YSLF
Sbjct: 185 WYSQCVTFNAFPTYTHEITYSLF 207


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,714
Number of Sequences: 438
Number of extensions: 4143
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)