Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L17
         (903 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09930.1 68418.m01148 ABC transporter family protein                28   7.4  
At4g11790.1 68417.m01878 Ran-binding protein 1 domain-containing...    28   9.7  
At3g08020.1 68416.m00979 PHD finger protein-related contains low...    28   9.7  

>At5g09930.1 68418.m01148 ABC transporter family protein 
          Length = 678

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 397 VLKKMPCTYKRKTELKYSLEDLKKAIDD 480
           V ++  CT+K + E+   LE+L+KAI++
Sbjct: 164 VKEEFMCTFKEEMEIARKLENLQKAIEE 191


>At4g11790.1 68417.m01878 Ran-binding protein 1 domain-containing
           protein / RanBP1 domain-containing protein contains Pfam
           profile PF00638: RanBP1 domain
          Length = 443

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 391 SASPVLLTGISGGVISEMAANKIRIYLSNILKPLNSALPSVRV 263
           S+ P LL+G   G IS   +N+     SN   P  SA+P V +
Sbjct: 252 SSQPSLLSGSQAGAIS---SNQPSFQFSNSQSPFTSAVPPVSI 291


>At3g08020.1 68416.m00979 PHD finger protein-related contains low
           similarity to PHD-finger domain proteins
          Length = 764

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +3

Query: 813 FCIFCXDKYIDPPVEXXIXCYVCXRWAH 896
           +C  C   Y D      + C +C RW H
Sbjct: 285 YCPVCLKVYRDSESTPMVCCDICQRWVH 312


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,964,114
Number of Sequences: 28952
Number of extensions: 303671
Number of successful extensions: 657
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2129873112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)