Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_L16
(903 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC064495-1|AAH64495.1| 299|Homo sapiens RCOR1 protein protein. 32 3.3
BC051003-1|AAH51003.1| 293|Homo sapiens RCOR1 protein protein. 32 3.3
AF155595-1|AAF01498.1| 482|Homo sapiens CoREST protein protein. 32 3.3
BC142635-1|AAI42636.1| 753|Homo sapiens SYNPO2L protein protein. 31 4.3
AK022983-1|BAB14346.1| 753|Homo sapiens protein ( Homo sapiens ... 31 4.3
AF137396-7|AAG41681.1| 326|Homo sapiens HOR5'Beta7 protein. 31 4.3
AB188489-1|BAD37139.1| 977|Homo sapiens synaptopodin 2-like pro... 31 4.3
BC077726-1|AAH77726.1| 1151|Homo sapiens sema domain, seven thro... 30 10.0
AY358124-1|AAQ88491.1| 1092|Homo sapiens SEMA5B protein. 30 10.0
AB040878-1|BAA95969.1| 1202|Homo sapiens KIAA1445 protein protein. 30 10.0
>BC064495-1|AAH64495.1| 299|Homo sapiens RCOR1 protein protein.
Length = 299
Score = 31.9 bits (69), Expect = 3.3
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -1
Query: 708 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 580
EKG +VSGKR+GRN A ++ + +C SP T AS
Sbjct: 3 EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44
>BC051003-1|AAH51003.1| 293|Homo sapiens RCOR1 protein protein.
Length = 293
Score = 31.9 bits (69), Expect = 3.3
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -1
Query: 708 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 580
EKG +VSGKR+GRN A ++ + +C SP T AS
Sbjct: 3 EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44
>AF155595-1|AAF01498.1| 482|Homo sapiens CoREST protein protein.
Length = 482
Score = 31.9 bits (69), Expect = 3.3
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -1
Query: 708 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT*AS 580
EKG +VSGKR+GRN A ++ + +C SP T AS
Sbjct: 3 EKGPEVSGKRRGRNNAAASASAAAASAAASAAC-ASPAATAAS 44
>BC142635-1|AAI42636.1| 753|Homo sapiens SYNPO2L protein protein.
Length = 753
Score = 31.5 bits (68), Expect = 4.3
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 787 GCVHEPPVQPXRXALSGX--IVLSPPGRPDLSPLAXAPGTG 903
G EPP P A++ I LS P RP P A APG G
Sbjct: 338 GGAPEPPAPPSAAAMTSTASIFLSAPLRPSARPEAPAPGPG 378
>AK022983-1|BAB14346.1| 753|Homo sapiens protein ( Homo sapiens
cDNA FLJ12921 fis, clone NT2RP2004600. ).
Length = 753
Score = 31.5 bits (68), Expect = 4.3
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 787 GCVHEPPVQPXRXALSGX--IVLSPPGRPDLSPLAXAPGTG 903
G EPP P A++ I LS P RP P A APG G
Sbjct: 338 GGAPEPPAPPSAAAMTSTASIFLSAPLRPSARPEAPAPGPG 378
>AF137396-7|AAG41681.1| 326|Homo sapiens HOR5'Beta7 protein.
Length = 326
Score = 31.5 bits (68), Expect = 4.3
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +1
Query: 652 LVRSPVPTLPLTGYLSAFLPSGSVALSHS 738
+ R PV T+P+ L AF GSV LSHS
Sbjct: 161 IFRGPVATIPIVLLLKAFPYCGSVVLSHS 189
>AB188489-1|BAD37139.1| 977|Homo sapiens synaptopodin 2-like
protein.
Length = 977
Score = 31.5 bits (68), Expect = 4.3
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 787 GCVHEPPVQPXRXALSGX--IVLSPPGRPDLSPLAXAPGTG 903
G EPP P A++ I LS P RP P A APG G
Sbjct: 562 GGAPEPPAPPSAAAMTSTASIFLSAPLRPSARPEAPAPGPG 602
>BC077726-1|AAH77726.1| 1151|Homo sapiens sema domain, seven
thrombospondin repeats (type 1 and type 1-like),
transmembra protein.
Length = 1151
Score = 30.3 bits (65), Expect = 10.0
Identities = 23/86 (26%), Positives = 35/86 (40%)
Frame = +1
Query: 637 PPGSSLVRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSV*VVRSKLGCVHEPPVQP 816
PPG+ P+ L +S LPS ++ +SH S + +SS +L + + P
Sbjct: 48 PPGARTAEGPIMVLAGPLAVSLLLPSLTLLVSHLSSSQDVSSEPSSEQQLCALSKHPTVA 107
Query: 817 XRXALSGXIVLSPPGRPDLSPLAXAP 894
+ PG D S LA P
Sbjct: 108 FEDLQPWVSNFTYPGARDFSQLALDP 133
>AY358124-1|AAQ88491.1| 1092|Homo sapiens SEMA5B protein.
Length = 1092
Score = 30.3 bits (65), Expect = 10.0
Identities = 23/86 (26%), Positives = 35/86 (40%)
Frame = +1
Query: 637 PPGSSLVRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSV*VVRSKLGCVHEPPVQP 816
PPG+ P+ L +S LPS ++ +SH S + +SS +L + + P
Sbjct: 48 PPGARTAEGPIMVLAGPLAVSLLLPSLTLLVSHLSSSQDVSSEPSSEQQLCALSKHPTVA 107
Query: 817 XRXALSGXIVLSPPGRPDLSPLAXAP 894
+ PG D S LA P
Sbjct: 108 FEDLQPWVSNFTYPGARDFSQLALDP 133
>AB040878-1|BAA95969.1| 1202|Homo sapiens KIAA1445 protein protein.
Length = 1202
Score = 30.3 bits (65), Expect = 10.0
Identities = 23/86 (26%), Positives = 35/86 (40%)
Frame = +1
Query: 637 PPGSSLVRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSV*VVRSKLGCVHEPPVQP 816
PPG+ P+ L +S LPS ++ +SH S + +SS +L + + P
Sbjct: 99 PPGARTAEGPIMVLAGPLAVSLLLPSLTLLVSHLSSSQDVSSEPSSEQQLCALSKHPTVA 158
Query: 817 XRXALSGXIVLSPPGRPDLSPLAXAP 894
+ PG D S LA P
Sbjct: 159 FEDLQPWVSNFTYPGARDFSQLALDP 184
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,684,757
Number of Sequences: 237096
Number of extensions: 2812197
Number of successful extensions: 12542
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12541
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11659288620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -