Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_L13
(910 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 214 7e-56
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 210 9e-55
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 120 2e-27
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 1e-06
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353... 29 6.7
05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880 28 8.9
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 214 bits (523), Expect = 7e-56
Identities = 99/148 (66%), Positives = 115/148 (77%)
Frame = +3
Query: 72 CRALQMGXPRGXXXXXXXXXXXXXXXWAXXAFKQAHMGXQWKANPFGGASHAKGIVLEXV 251
C ++ MG RG WA A+K++H+G +WK PF G+SHAKGIVLE +
Sbjct: 166 CPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKI 224
Query: 252 GVXAKQPNSAIRKCVRVQLIKXGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDI 431
G+ AKQPNSAIRKC RVQL+K GKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDI
Sbjct: 225 GIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDI 284
Query: 432 PGVRFKVVKVANVSLLALYKEKKERPRS 515
PGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 285 PGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 207 bits (505), Expect = 1e-53
Identities = 96/141 (68%), Positives = 110/141 (78%)
Frame = +3
Query: 87 MGXPRGXXXXXXXXXXXXXXXWAXXAFKQAHMGXQWKANPFGGASHAKGIVLEXVGVXAK 266
MG RG WA A+K++H+G +WK PF G+SHAKGIVLE +G+ AK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 267 QPNSAIRKCVRVQLIKXGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 446
QPNSAIRKC RVQL+K GKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 447 KVVKVANVSLLALYKEKKERP 509
KVVKV+ VSLLAL+KEKKE+P
Sbjct: 120 KVVKVSGVSLLALFKEKKEKP 140
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 210 bits (514), Expect = 9e-55
Identities = 98/143 (68%), Positives = 112/143 (78%)
Frame = +3
Query: 87 MGXPRGXXXXXXXXXXXXXXXWAXXAFKQAHMGXQWKANPFGGASHAKGIVLEXVGVXAK 266
MG RG WA A+K++H+G +WK PF G+SHAKGIVLE +G+ AK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 267 QPNSAIRKCVRVQLIKXGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 446
QPNSAIRKC RVQL+K GKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 447 KVVKVANVSLLALYKEKKERPRS 515
KVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 120 bits (289), Expect = 2e-27
Identities = 53/83 (63%), Positives = 64/83 (77%)
Frame = +3
Query: 150 WAXXAFKQAHMGXQWKANPFGGASHAKGIVLEXVGVXAKQPNSAIRKCVRVQLIKXGKKV 329
WA A+K++H G +WK PF G+SHAKGIVLE +G+ AKQPNSAI KC RVQL+K GKK+
Sbjct: 93 WADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAICKCARVQLVKNGKKI 151
Query: 330 TAFVPRDGCLNHIEENDEVLVAG 398
AFVP DGCLN I+EN+ V G
Sbjct: 152 AAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 1e-06
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +3
Query: 378 DEVLVAGFGRKGHAVGDIPGVRFKVVK 458
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>02_05_0568 -
30034280-30034393,30034888-30035163,30035246-30035371,
30035595-30035753,30035893-30036063,30036374-30036493,
30036565-30036924,30038800-30039686,30039790-30040363,
30041379-30041507,30042423-30042494,30042572-30042728,
30042974-30043023,30043569-30044327
Length = 1317
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -1
Query: 427 SPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAVTFFP 317
+PT P PNP ST SM F+ PS A FP
Sbjct: 3 TPTGNP-NPNPNPSTPFEVSMLFKPPSNAPAAAPIFP 38
>05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880
Length = 898
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 409 LRPNPATSTSSFSSMWFRQPSRGT 338
L P+ +T T +FS WFR PS+ T
Sbjct: 196 LPPDGSTVTIAFSERWFRIPSKWT 219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,578,014
Number of Sequences: 37544
Number of extensions: 335379
Number of successful extensions: 885
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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