Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L13
         (910 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              175   3e-44
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              170   1e-42
SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)         32   0.56 
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.0  
SB_3221| Best HMM Match : rve (HMM E-Value=3)                          29   3.9  

>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score =  175 bits (427), Expect = 3e-44
 Identities = 81/115 (70%), Positives = 90/115 (78%)
 Frame = +3

Query: 96  PRGXXXXXXXXXXXXXXXWAXXAFKQAHMGXQWKANPFGGASHAKGIVLEXVGVXAKQPN 275
           PRG               W   A+K+AH+G   KANPFGGASHAKGIVLE VGV AKQPN
Sbjct: 3   PRGLRTARKLRSHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPN 62

Query: 276 SAIRKCVRVQLIKXGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGV 440
           SAIRKCVRVQLIK GKK+TAFVP DGCLN+IEENDEVL++GFGR+GHAVGDIPG+
Sbjct: 63  SAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIPGI 117


>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 143

 Score =  170 bits (414), Expect = 1e-42
 Identities = 79/88 (89%), Positives = 85/88 (96%)
 Frame = +3

Query: 252 GVXAKQPNSAIRKCVRVQLIKXGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDI 431
           GV AKQPNSAIRKCVRVQLIK GKK+TAFVP DGCLN+IEENDEVL++GFGR+GHAVGDI
Sbjct: 56  GVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDI 115

Query: 432 PGVRFKVVKVANVSLLALYKEKKERPRS 515
           PGVRFKVVKVANVSLLAL+KEKKERPRS
Sbjct: 116 PGVRFKVVKVANVSLLALFKEKKERPRS 143


>SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)
          Length = 302

 Score = 32.3 bits (70), Expect = 0.56
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +3

Query: 228 KGIVLEXVGVXAKQPNSAIRKCVRVQLIKXGKKVTAFVP 344
           KG+ ++      K+PNSA RKC  ++L   GK ++A++P
Sbjct: 230 KGVCVKVFIRKPKKPNSAQRKCALLKL-SNGKTISAYIP 267


>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 173 SPHGXAMEG*PFRWCISRKGHRPRXSWCXS*AA 271
           S HG  MEG P  W +S  G  P+ S C S +A
Sbjct: 85  SQHGTRMEGVPVCWYVSVWGLSPQVSQCDSVSA 117


>SB_3221| Best HMM Match : rve (HMM E-Value=3)
          Length = 324

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 23/70 (32%), Positives = 34/70 (48%)
 Frame = -1

Query: 538 SLITMYTYDLGRSFFSL*RARRDTLATFTTLKRTPGMSPTA*PLRPNPATSTSSFSSMWF 359
           S  T  TYDL  SF+S+  +  + LAT   +K++P +   +  L+P  A   S  S    
Sbjct: 9   SFDTFPTYDLA-SFYSVLCSGDEQLATIKLMKKSPSLFQKSHTLKPR-ANCASIASETLA 66

Query: 358 RQPSRGTNAV 329
           +Q  R  N V
Sbjct: 67  QQCWRSLNTV 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,716,245
Number of Sequences: 59808
Number of extensions: 365033
Number of successful extensions: 651
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2621784220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)