Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L13
         (910 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo...   210   1e-54
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi...   202   3e-52
At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial fam...    31   1.1  
At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to ...    29   5.6  
At1g68190.1 68414.m07790 zinc finger (B-box type) family protein       28   7.4  

>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
           ribosomal protein S23, Fragaria x ananassa, PIR:S56673
          Length = 142

 Score =  210 bits (513), Expect = 1e-54
 Identities = 98/143 (68%), Positives = 112/143 (78%)
 Frame = +3

Query: 87  MGXPRGXXXXXXXXXXXXXXXWAXXAFKQAHMGXQWKANPFGGASHAKGIVLEXVGVXAK 266
           MG  RG               WA   +K++H+G +WK  PF G+SHAKGIVLE +G+ AK
Sbjct: 1   MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59

Query: 267 QPNSAIRKCVRVQLIKXGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 446
           QPNSAIRKC RVQLIK GKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60  QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 119

Query: 447 KVVKVANVSLLALYKEKKERPRS 515
           KVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142


>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
           to 40S ribosomal protein S23 (S12) GB:P46297 from
           [Fragaria x ananassa]
          Length = 142

 Score =  202 bits (493), Expect = 3e-52
 Identities = 96/143 (67%), Positives = 110/143 (76%)
 Frame = +3

Query: 87  MGXPRGXXXXXXXXXXXXXXXWAXXAFKQAHMGXQWKANPFGGASHAKGIVLEXVGVXAK 266
           MG  RG               WA   +K+++ G +WK  PF  +SHAKGIVLE +G+ AK
Sbjct: 1   MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAK 59

Query: 267 QPNSAIRKCVRVQLIKXGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 446
           QPNSAIRKC RVQLIK GKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60  QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 119

Query: 447 KVVKVANVSLLALYKEKKERPRS 515
           KVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142


>At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial family
           protein
          Length = 125

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 23/65 (35%), Positives = 37/65 (56%)
 Frame = +3

Query: 264 KQPNSAIRKCVRVQLIKXGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVR 443
           K+PNSA RK  +V+L      + A +P +G  ++ +E+  VL+ G GR    V D PGV+
Sbjct: 43  KKPNSAPRKIAKVRL-SNRHDIFAHIPGEG--HNSQEHSTVLIRG-GR----VKDSPGVK 94

Query: 444 FKVVK 458
              ++
Sbjct: 95  SHCIR 99


>At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to
           MtN3 GI:1619602 (root nodule development) from [Medicago
           truncatula]
          Length = 289

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 450 VVKVANVSLLALYKEKKERPRS*VYIVISDLLSGSALFI 566
           VV++  +SL   Y  KKE+  +  +++  D+L   A+F+
Sbjct: 80  VVQIVYISLFFFYAPKKEKTLTVKFVLFVDVLGFGAIFV 118


>At1g68190.1 68414.m07790 zinc finger (B-box type) family protein
          Length = 356

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 403 PNPATSTSSFSSMWFRQP-SRGTNAVTFFPXLMSCTR 296
           P PA+ST SFSS     P S     ++F P L + TR
Sbjct: 300 PKPASSTISFSSSETDNPYSHSEEVISFCPSLSNNTR 336


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,412,393
Number of Sequences: 28952
Number of extensions: 240731
Number of successful extensions: 528
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)