Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L12
         (902 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)              34   0.18 
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_10552| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)                29   6.8  
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)              29   6.8  
SB_33872| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_8338| Best HMM Match : PA (HMM E-Value=5.7e-10)                     28   9.0  

>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 2735

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 24/78 (30%), Positives = 36/78 (46%)
 Frame = +1

Query: 163 VVENADSVVINDPDPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVD 342
           +V +  SVVI+ P   + QP V     P  N+  I+N    Y P+   +EP  +  ++V 
Sbjct: 272 IVYHQASVVIHRPPIVYHQPPVVFHQPPPMNKQPIMNSIDAYVPHAF-FEPHSSEVHHVA 330

Query: 343 RPQGRPYFKPTPFPGARG 396
              G P+F P     A G
Sbjct: 331 TYNGAPHFYPASSGNAYG 348


>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2851

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 22/58 (37%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
 Frame = +1

Query: 226 VGNGYEPIDNRP----YIVNPPKDYNPNGNGYEPID-NGAYYVDRPQGRPYFKPTPFP 384
           VG  +E  + RP    Y   PP DY  N N Y P   NG Y   RP    Y  P   P
Sbjct: 244 VGRDHEMYNGRPGPGGYYRRPPHDYQFNRN-YPPNQYNGNYQGGRPPPHGYGDPNGRP 300


>SB_10552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 20/72 (27%), Positives = 26/72 (36%)
 Frame = +1

Query: 160 RVVENADSVVINDPDPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYV 339
           R   N D    N  +   A+  V +GY+  DN  Y          + NGY   DN     
Sbjct: 364 RTEVNEDQTYDNTENEIHAEAHV-DGYQTYDNPTYDTEHETHAEAHVNGYPTYDNPTCDT 422

Query: 340 DRPQGRPYFKPT 375
             P   P +K T
Sbjct: 423 HSPARAPAYKRT 434


>SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)
          Length = 839

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 272 ILPKTTTLMETATNLSTTVHITWTVPKADLTSS 370
           + PKTTT +ET     TTV +  T P  + TS+
Sbjct: 236 LAPKTTTALETTVEAKTTV-VPETTPALETTSA 267


>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
          Length = 3094

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 272  ILPKTTTLMETATNLSTTVHITWTVPKADLTSS 370
            + PKTTT +ET     TTV +  T P  + TS+
Sbjct: 2298 LAPKTTTALETTVEAKTTV-VPETTPALETTSA 2329


>SB_33872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 716

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 172 NADSVVINDPDPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGN 303
           N   ++ N  D  +   T    YEP +  P  + P   Y+P+GN
Sbjct: 52  NTAKIISNTGDVIYKTRTHEKVYEPSEKDPSAIPPFLAYSPSGN 95


>SB_8338| Best HMM Match : PA (HMM E-Value=5.7e-10)
          Length = 326

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 172 NADSVVINDPDPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGN 303
           N   ++ N  D  +   T    YEP +  P  + P   Y+P+GN
Sbjct: 143 NTAKIISNTGDVIYKTRTHEKVYEPSEKDPSAIPPFLAYSPSGN 186


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,395,451
Number of Sequences: 59808
Number of extensions: 408654
Number of successful extensions: 1179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2597949818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)