Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L12
         (902 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13760.1 68418.m01604 expressed protein similar to unknown pr...    31   1.0  
At5g36150.1 68418.m04356 pentacyclic triterpene synthase, putati...    30   2.4  
At2g28940.1 68415.m03517 protein kinase family protein contains ...    29   4.2  
At1g72110.1 68414.m08335 expressed protein                             28   7.4  
At1g56210.1 68414.m06460 copper chaperone (CCH)-related low simi...    28   7.4  
At1g76010.1 68414.m08825 expressed protein                             28   9.7  
At1g07310.1 68414.m00778 C2 domain-containing protein contains s...    28   9.7  

>At5g13760.1 68418.m01604 expressed protein similar to unknown
           protein (gb AAF63775.1)
          Length = 569

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +1

Query: 121 LALLAMANAQDPVRVVENADSVVINDPDPFFAQPTVGNGYEPIDNRPYIVNPP 279
           LA L   N  +P+R++ N  S     P P  AQP   +  +P    P    PP
Sbjct: 47  LASLNRLNPTNPLRIIVNGGSRFTTPPPPNLAQPLRSSSRQPPPPPPRPQTPP 99


>At5g36150.1 68418.m04356 pentacyclic triterpene synthase, putative
           similar to pentacyclic triterpene synthase [gi:6650208]
           [PMID:11247608]; oxidosqualene cyclase; also highly
           similar to beta-amyrin synthase, lupeol synthase,
           cycloartenol synthase
          Length = 729

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 217 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAY-YVDRPQGRP 360
           +PT+  GY  +    +  NPP DY    N +  I  G + Y D+ QG P
Sbjct: 438 RPTLIKGYSYLRKSQFTENPPGDYI---NMFRDISKGGWGYSDKDQGWP 483


>At2g28940.1 68415.m03517 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 343

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 273 INDVRAVVNRFVAVSYSRLG-KEWIGVIDHN*VGVFHYPNGVLSVGHSQQSEDENHEEFH 97
           I  +  ++N  +   YS  G KEWI  +  N +GV ++PN V  VG+    ++   +   
Sbjct: 9   IRRLMLLLNSLIVKVYSVQGHKEWINEV--NFLGVVNHPNLVKLVGYCADDDERGMQRLL 66

Query: 96  FY 91
            Y
Sbjct: 67  VY 68


>At1g72110.1 68414.m08335 expressed protein
          Length = 479

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 472 NSYEILKYIVNTLFRY*-FSKIFFTSHREHQGK 377
           N+  I++ I NTL  +  FS I  T H EH+GK
Sbjct: 41  NASTIVEGIKNTLINHPRFSSILVTGHGEHKGK 73


>At1g56210.1 68414.m06460 copper chaperone (CCH)-related low
           similarity to copper homeostasis factor
           [GI:3168840][PMID:9701579] and farnesylated proteins
           ATFP3 [GI:4097547] and GMFP7 [Glycine max][GI:4097573];
           contains PF00403 Heavy-metal-associated domain
          Length = 364

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
 Frame = +1

Query: 145 AQDPVRVVENADSVVINDPDPFFAQPTVGNGYEPIDNRPYIVNPP------KDYNPNG 300
           AQ PV V    D+     P P ++   + NGY+P D  P    P        D NPNG
Sbjct: 307 AQPPVSV----DAASYYTPPPPYSYAYMHNGYQPSDQNPCQPRPSDSFELFSDENPNG 360


>At1g76010.1 68414.m08825 expressed protein
          Length = 350

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = +1

Query: 199 PDPFFAQPTVGNGYE-PIDNRPYIVNPPKDYNPNGNG-YE-PIDNGAYYVDRPQG-RPYF 366
           P+ + A    G GY+ P ++R Y      D  P G G Y+ P   G Y  D PQG R Y 
Sbjct: 212 PNEYDAPQDGGYGYDAPHEHRGYDDRGGYDAPPQGRGGYDGPQGRGGY--DGPQGRRGYD 269

Query: 367 KPTPFPGARGG 399
            P   P  RGG
Sbjct: 270 GP---PQGRGG 277


>At1g07310.1 68414.m00778 C2 domain-containing protein contains
           similarity to shock protein SRC2 [Glycine max]
           gi|2055230|dbj|BAA19769 ; contains Pfam profile
           PF00168:C2 domain
          Length = 352

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 274 PPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFP 384
           PP  + P     +P+D    Y   PQG  Y+ P+P P
Sbjct: 141 PPPQHPPPRPQSQPLD----YYSAPQGNHYYSPSPPP 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,008,620
Number of Sequences: 28952
Number of extensions: 299757
Number of successful extensions: 634
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2129873112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)