Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L11
         (905 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81124-12|CAI46579.2|  489|Caenorhabditis elegans Hypothetical p...    29   4.6  
Z48245-2|CAA88291.1|  309|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z37139-10|CAA85495.1|  309|Caenorhabditis elegans Hypothetical p...    28   8.0  
U95074-2|AAB94648.1|  309|Caenorhabditis elegans cyclophilin iso...    28   8.0  
U36581-1|AAC47131.1|  309|Caenorhabditis elegans cyclophilin iso...    28   8.0  

>Z81124-12|CAI46579.2|  489|Caenorhabditis elegans Hypothetical
           protein T21B4.17 protein.
          Length = 489

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 10/37 (27%), Positives = 24/37 (64%)
 Frame = -2

Query: 166 YRRQENDRIEHRRXKDRQRSTRDFIAIEDVRFRRKFE 56
           Y   +N+R +  + KD +++ ++++A + ++ R KFE
Sbjct: 174 YFSAQNERAKFSKHKDAEKNEQEYLAQKKIKDREKFE 210


>Z48245-2|CAA88291.1|  309|Caenorhabditis elegans Hypothetical
           protein T27D1.1 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 196 PACDVPRNWIYRRQENDRIEHRRXKDRQRSTR 101
           P C  P++W+YR  +N++ +H    D++R  R
Sbjct: 204 PKC--PKSWLYRDDDNEK-KHEMRNDKRREYR 232


>Z37139-10|CAA85495.1|  309|Caenorhabditis elegans Hypothetical
           protein T27D1.1 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 196 PACDVPRNWIYRRQENDRIEHRRXKDRQRSTR 101
           P C  P++W+YR  +N++ +H    D++R  R
Sbjct: 204 PKC--PKSWLYRDDDNEK-KHEMRNDKRREYR 232


>U95074-2|AAB94648.1|  309|Caenorhabditis elegans cyclophilin
           isoform 9 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 196 PACDVPRNWIYRRQENDRIEHRRXKDRQRSTR 101
           P C  P++W+YR  +N++ +H    D++R  R
Sbjct: 204 PKC--PKSWLYRDDDNEK-KHEMRNDKRREYR 232


>U36581-1|AAC47131.1|  309|Caenorhabditis elegans cyclophilin
           isoform 9 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 196 PACDVPRNWIYRRQENDRIEHRRXKDRQRSTR 101
           P C  P++W+YR  +N++ +H    D++R  R
Sbjct: 204 PKC--PKSWLYRDDDNEK-KHEMRNDKRREYR 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,543,886
Number of Sequences: 27780
Number of extensions: 243025
Number of successful extensions: 548
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)