Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L11
         (905 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70300.1 68414.m08088 potassium transporter, putative similar...    30   2.4  
At4g31600.1 68417.m04489 UDP-glucuronic acid/UDP-N-acetylgalacto...    29   5.6  
At3g20830.1 68416.m02634 protein kinase family protein contains ...    29   5.6  
At1g05520.1 68414.m00565 transport protein, putative similar to ...    28   9.8  

>At1g70300.1 68414.m08088 potassium transporter, putative similar to
           potassium transporter HAK2p [Mesembryanthemum
           crystallinum] gi|14091471|gb|AAK53759; KUP/HAK/KT
           Transporter family member, PMID:11500563; contains Pfam
           profile PF02705: K+ potassium transporter
          Length = 782

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 328 GGVGYPYVNMRMKSERGSGLSYDIGIYVNQNYLRIN 435
           GGV Y   N  MK++ GSGL   + I +   +LR N
Sbjct: 723 GGVAYIMGNAYMKAKPGSGLLKRLAINIGYEFLRRN 758


>At4g31600.1 68417.m04489 UDP-glucuronic
           acid/UDP-N-acetylgalactosamine transporter-related
           contains weak similarity to UDP-glucuronic
           acid/UDP-N-acetylgalactosamine transporter (UDP-
           GlcA/UDP-GalNAc transporter) (Swiss-Prot:Q9NTN3) [Homo
           sapiens]
          Length = 323

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 265 IITGIQALDSLNSKATVNITAGGVGYPYVNMRMKSERGSGLSYDI 399
           ++ G   + +LN    V  TAGGV Y Y   R K  + + L  D+
Sbjct: 274 VLLGGVEVHALNVSGLVVNTAGGVWYSYAKYRQKKAKPAKLMSDL 318


>At3g20830.1 68416.m02634 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 408

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 780 PIRKPPXPARWPIH*CRKNLPHL 712
           P   PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406


>At1g05520.1 68414.m00565 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 783

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 163 DISSSLVHHKLVQYNAIPFMKRVKNYFYSSADNKIITGIQALD 291
           D+S  L  HK +  +A PF K+ +  FY +  N+++     LD
Sbjct: 325 DLSEPLRSHKDLDKDAAPFYKKAEK-FYDALANQLVNQGHVLD 366


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,624,414
Number of Sequences: 28952
Number of extensions: 224312
Number of successful extensions: 470
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2139598560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)