Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L10
         (1095 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.21 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.28 
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    28   2.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.6  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    27   6.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   6.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.1  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
 Frame = +1

Query: 661  PPHXXXXSTXPPXTXGPPPXR--PHPXXSPXSPXLPXPXSXAP 783
            PP     +  PP    PPP    P P   P +P  P P S AP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741



 Score = 30.7 bits (66), Expect = 0.37
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +1

Query: 643  PAXHPXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXP 768
            P   P P       + PP   GPP   P P  +  +P +P P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 17/47 (36%), Positives = 18/47 (38%)
 Frame = +1

Query: 643 PAXHPXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
           PA  P PP        PP   G P   P P  +P  P  P P   AP
Sbjct: 444 PAAPPLPPSAPIA---PPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +1

Query: 643 PAXHPXPPHXXXXSTXPPX-TXGPPPX-RPHPXXSPXSPXL 759
           P+    P +       PP  T GPPP  +P P  SP +P L
Sbjct: 404 PSTQKLPSNFRVTQGAPPSHTYGPPPPVQPKPKISPTTPRL 444


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 21/69 (30%), Positives = 26/69 (37%)
 Frame = +3

Query: 723  AXPXPLXXLPXPPXXXVXCPXPARPMPDXHHAXPFLSXLLPXHTTXLXRPXPXLTPPPXC 902
            A P P   +  PP   V  P  A P+P    A P     +P  +     P P +  PP  
Sbjct: 1101 APPVPKPSVAVPP---VPAPSGAPPVPKPSVAAP----PVPVPSGAPPVPKPSVAAPPVP 1153

Query: 903  PPXRXPPSP 929
             P   PP P
Sbjct: 1154 APSGAPPVP 1162


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
 Frame = +3

Query: 786  PARPMPDXHHAXPFLSXLLPXH--TTXLXRPXPXLTP---PPXCPPXRXPPSPXXAD 941
            P +P    H   P +  LLP    ++    P P LTP   PP  PP +   S    D
Sbjct: 1003 PNKPTKPDHLVAPRVKPLLPPRSGSSSSGVPAPNLTPVNVPPTPPPRKSSASQRSGD 1059


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 19/60 (31%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
 Frame = +3

Query: 756 PPXXXVXCPXPARPMPDXHHAXPFLSXLLPXHTTXLXRPXPXLTPPPXCP--PXRXPPSP 929
           PP   +  P PA   P    A P  S L P       +P   +  PP  P  P   PP P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPP-----AQPAAPVKSPPSAPSLPSAVPPMP 198


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 16/46 (34%), Positives = 17/46 (36%)
 Frame = +1

Query: 643 PAXHPXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXPXSXA 780
           PA  P PP         P   GPPP  P P  +   P  P P   A
Sbjct: 746 PAPIPVPP-------PAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,144,551
Number of Sequences: 5004
Number of extensions: 25912
Number of successful extensions: 100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 577732780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)