Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_L10
(1095 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 37 0.025
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 34 0.23
SB_12656| Best HMM Match : CS (HMM E-Value=0.0018) 33 0.54
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 33 0.54
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.71
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.94
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.94
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 25 0.94
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 31 1.6
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 31 1.6
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.2
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42) 31 2.2
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 30 2.9
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 30 2.9
SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08) 30 3.8
SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.8
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 5.0
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 29 5.0
SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.7
SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.7
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 37.1 bits (82), Expect = 0.025
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = +1
Query: 643 PAXHPXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
P P PP + PP PPP P P P P P P AP
Sbjct: 374 PPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAP 420
Score = 35.9 bits (79), Expect = 0.057
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = +1
Query: 643 PAXHPXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
P P PP S PP PPP P P P P P P P
Sbjct: 375 PPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPP 421
Score = 35.5 bits (78), Expect = 0.076
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +1
Query: 643 PAXHPXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
P+ P PP PP PPP P P P P P P + P
Sbjct: 376 PSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPP 422
Score = 35.1 bits (77), Expect = 0.10
Identities = 16/47 (34%), Positives = 17/47 (36%)
Frame = +1
Query: 643 PAXHPXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
P P PP PP PPP +P P P P P P P
Sbjct: 368 PPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPP 414
Score = 35.1 bits (77), Expect = 0.10
Identities = 16/47 (34%), Positives = 17/47 (36%)
Frame = +1
Query: 643 PAXHPXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
P P PP PP + PPP P P P P P P P
Sbjct: 369 PPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPP 415
Score = 34.3 bits (75), Expect = 0.18
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = +1
Query: 643 PAXHPXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
P P PP PP PPP P P P P P P P
Sbjct: 385 PPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPP 431
Score = 33.9 bits (74), Expect = 0.23
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = +1
Query: 643 PAXHPXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
P P PP PP PPP P P P P P P P
Sbjct: 379 PPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPP 425
Score = 33.5 bits (73), Expect = 0.31
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +1
Query: 655 PXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
P PP PP PPP P P P P P P P
Sbjct: 366 PPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPP 408
Score = 33.5 bits (73), Expect = 0.31
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = +1
Query: 655 PXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
P PP + PP PPP P P P P P P P
Sbjct: 367 PPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPP 409
Score = 33.5 bits (73), Expect = 0.31
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +1
Query: 643 PAXHPXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXP 768
P P PP PP PPP P P P P P P
Sbjct: 391 PPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPP 432
Score = 32.7 bits (71), Expect = 0.54
Identities = 19/60 (31%), Positives = 19/60 (31%)
Frame = +3
Query: 750 PXPPXXXVXCPXPARPMPDXHHAXPFLSXLLPXHTTXLXRPXPXLTPPPXCPPXRXPPSP 929
P PP P P P P P P P P PPP PP PP P
Sbjct: 369 PPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPP 428
Score = 31.9 bits (69), Expect = 0.94
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = +1
Query: 643 PAXHPXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
P P PP PP PPP P P P P P P P
Sbjct: 367 PPPPPPPPPPSPPPPPPPPPPSPPPP-PQPPPPPPPPPPPPPPPPPP 412
Score = 31.9 bits (69), Expect = 0.94
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = +1
Query: 643 PAXHPXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
P P P PP PPP P P P P P P P
Sbjct: 381 PPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPP 427
Score = 31.1 bits (67), Expect = 1.6
Identities = 21/67 (31%), Positives = 21/67 (31%)
Frame = +3
Query: 729 PXPLXXLPXPPXXXVXCPXPARPMPDXHHAXPFLSXLLPXHTTXLXRPXPXLTPPPXCPP 908
P P P PP P P P P P P P P PPP PP
Sbjct: 365 PPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPP--PPPPPPPPPPPPPPPPPPPPPPAPPP 422
Query: 909 XRXPPSP 929
PP P
Sbjct: 423 PPPPPPP 429
Score = 30.7 bits (66), Expect = 2.2
Identities = 21/73 (28%), Positives = 23/73 (31%)
Frame = +3
Query: 708 PXXQXAXPXPLXXLPXPPXXXVXCPXPARPMPDXHHAXPFLSXLLPXHTTXLXRPXPXLT 887
P P P P PP P P +P P P P P P
Sbjct: 366 PPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPP-----PPPPPPPPPPPPPPAP 420
Query: 888 PPPXCPPXRXPPS 926
PPP PP PP+
Sbjct: 421 PPPPPPPPPPPPA 433
Score = 30.7 bits (66), Expect = 2.2
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = +1
Query: 643 PAXHPXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
P P P PP PPP P P P P P P P
Sbjct: 382 PPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPP 428
Score = 29.9 bits (64), Expect = 3.8
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +1
Query: 682 STXPPXTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
S PP PPP P P P P P P P
Sbjct: 364 SPPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPP 397
Score = 28.7 bits (61), Expect = 8.7
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = +1
Query: 655 PXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
P PP PP PPP P P P P + AP
Sbjct: 398 PPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPPALRLACAP 440
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 33.9 bits (74), Expect = 0.23
Identities = 26/83 (31%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Frame = -3
Query: 928 GEGGXRXGG--HXGGGVRXGXGRXRXVVXXGRXXERKGXAWWXSGIGRAGXGQXTXXXGG 755
G GG R GG + GG G G R R R G + G G G G GG
Sbjct: 131 GYGGGRGGGGGYRSGGGYRGGGGYRGGGGGYRGRGRGGGGYGGGGYGGGGYGGGGHGGGG 190
Query: 754 XGSXXXGKGXAXWXXGQXWXEGG 686
G G G + G + GG
Sbjct: 191 YGGGGYGGGGGGY-GGSGYGGGG 212
>SB_12656| Best HMM Match : CS (HMM E-Value=0.0018)
Length = 277
Score = 32.7 bits (71), Expect = 0.54
Identities = 21/66 (31%), Positives = 26/66 (39%)
Frame = +3
Query: 729 PXPLXXLPXPPXXXVXCPXPARPMPDXHHAXPFLSXLLPXHTTXLXRPXPXLTPPPXCPP 908
P PL PP + P P P P H P + +P + + P P L P P P
Sbjct: 130 PSPLPATSIPPSRYIHLPFPIHPSPFPLHPSPLPATSIPP-SRYIHPPFP-LHPSP-LPA 186
Query: 909 XRXPPS 926
PPS
Sbjct: 187 TSIPPS 192
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 32.7 bits (71), Expect = 0.54
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +1
Query: 652 HPXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
HP P PP P P P P SP P P P +P
Sbjct: 194 HPTSPSQITQPPPPPPRPPPSPPPPPPPPSPSPPRPPPPPPPSP 237
Score = 29.1 bits (62), Expect = 6.6
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +1
Query: 655 PXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSP 753
P PP PP P P RP P P P
Sbjct: 206 PPPPRPPPSPPPPPPPPSPSPPRPPPPPPPSPP 238
Score = 28.7 bits (61), Expect = 8.7
Identities = 13/40 (32%), Positives = 15/40 (37%)
Frame = +1
Query: 643 PAXHPXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLP 762
P+ P PP PP P P RP P P +P
Sbjct: 213 PSPPPPPPPPSPSPPRPPPPPPPSPPRPLAAKLPEPPPIP 252
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 32.3 bits (70), Expect = 0.71
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = +1
Query: 655 PXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
P PP PP T GPPP P P P P P P + P
Sbjct: 366 PPPPPTNKPPPPPPPTNGPPPPPP-PTNGPPPP--PPPTNGPP 405
Score = 32.3 bits (70), Expect = 0.71
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = +1
Query: 655 PXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
P PP PP T GPPP P P P P P P + P
Sbjct: 376 PPPPPTNGPPPPPPPTNGPPPP-PPPTNGPPPP--PPPTNGPP 415
Score = 28.7 bits (61), Expect = 8.7
Identities = 16/43 (37%), Positives = 17/43 (39%)
Frame = +1
Query: 655 PXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
P PP S PP PPP P P P P P P + P
Sbjct: 347 PPPPTNNPPSPPPPTNNTPPP--PPPTNKPPPP--PPPTNGPP 385
Score = 28.7 bits (61), Expect = 8.7
Identities = 22/68 (32%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Frame = +3
Query: 729 PXPLXXLPXPPXXXVXCPXPARPMPDXHHAXPFLSXLLPXHTTXLXRPXPXLT-PPPXCP 905
P P P PP P P P P P P T P P PPP P
Sbjct: 348 PPPTNNPPSPPPPTNNTPPP--PPPTNKPPPP------PPPTNGPPPPPPPTNGPPPPPP 399
Query: 906 PXRXPPSP 929
P PP P
Sbjct: 400 PTNGPPPP 407
Score = 28.7 bits (61), Expect = 8.7
Identities = 14/43 (32%), Positives = 16/43 (37%)
Frame = +1
Query: 655 PXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
P PP + PP PP P P P P P P + P
Sbjct: 355 PSPPPPTNNTPPPPPPTNKPPPPPPPTNGPPPP--PPPTNGPP 395
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 31.9 bits (69), Expect = 0.94
Identities = 15/47 (31%), Positives = 17/47 (36%)
Frame = +1
Query: 643 PAXHPXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
P + PP + PP G PP P P S P P P P
Sbjct: 948 PGGNAPPPPPPPGGSAPPPGGGAPPLPPPPGGSAPPPPPPPPPPPPP 994
Score = 29.9 bits (64), Expect = 3.8
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = +1
Query: 655 PXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
P PP PP G P +P P P P P AP
Sbjct: 922 PPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAP 964
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 31.9 bits (69), Expect = 0.94
Identities = 23/75 (30%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Frame = +3
Query: 723 AXPXPLXXLPXPPXXXVXCPXPARPMPDXHHAXPFLSXLL-----PXHTTXLXRPXPXL- 884
A P PL P PP P P + P P T+ L P P
Sbjct: 907 APPPPLPLAPEPPPPLPPPPPPIQTTRPTVPTTPTTQASTTRPTPPPPTSALPPPIPATQ 966
Query: 885 TPPPXCPPXRXPPSP 929
PPP PP PP P
Sbjct: 967 VPPPPLPPLPPPPPP 981
Score = 30.7 bits (66), Expect = 2.2
Identities = 19/67 (28%), Positives = 22/67 (32%)
Frame = +3
Query: 729 PXPLXXLPXPPXXXVXCPXPARPMPDXHHAXPFLSXLLPXHTTXLXRPXPXLTPPPXCPP 908
P P LP P P P P+ P + TT P P PP P
Sbjct: 906 PAPPPPLPLAPEPPPPLPPPPPPIQTTRPTVP-TTPTTQASTTRPTPPPPTSALPPPIPA 964
Query: 909 XRXPPSP 929
+ PP P
Sbjct: 965 TQVPPPP 971
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 25.4 bits (53), Expect(2) = 0.94
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +3
Query: 546 PSTVRSAHQHXXYPXSPXIHLQNPPXLXSS 635
PS R H YP SP + +PP SS
Sbjct: 336 PSPPRYPSSHPRYPPSPPRYPPSPPRYPSS 365
Score = 25.0 bits (52), Expect(2) = 0.94
Identities = 22/67 (32%), Positives = 25/67 (37%)
Frame = +3
Query: 729 PXPLXXLPXPPXXXVXCPXPARPMPDXHHAXPFLSXLLPXHTTXLXRPXPXLTPPPXCPP 908
P PL LP P + P P H P S L ++ P PPP P
Sbjct: 371 PSPLRYLPSP----IRYPPSHSRYPSSHPRYP-PSHLRYPPSSLRYLPSHLRYPPP---P 422
Query: 909 XRXPPSP 929
R PPSP
Sbjct: 423 LRYPPSP 429
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 31.5 bits (68), Expect = 1.2
Identities = 15/47 (31%), Positives = 17/47 (36%)
Frame = +1
Query: 643 PAXHPXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
P P PP PP PPP P P +P P P + P
Sbjct: 103 PPPPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYP 149
Score = 31.1 bits (67), Expect = 1.6
Identities = 16/47 (34%), Positives = 17/47 (36%)
Frame = +1
Query: 643 PAXHPXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
P P PP PP PPP P P +P P P P P
Sbjct: 135 PPNAPYPPSPNAPYPPPPNPPYPPPLYP-PPPNPPPPNAPYPPPPYP 180
Score = 31.1 bits (67), Expect = 1.6
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +1
Query: 643 PAXHPXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXP 768
P +P PP+ + P PPP P P P +P P P
Sbjct: 158 PPLYPPPPNPPPPNAPYPPPPYPPPPNP-PYPPPPNPPYPPP 198
Score = 31.1 bits (67), Expect = 1.6
Identities = 21/67 (31%), Positives = 23/67 (34%)
Frame = +3
Query: 729 PXPLXXLPXPPXXXVXCPXPARPMPDXHHAXPFLSXLLPXHTTXLXRPXPXLTPPPXCPP 908
P P P PP P P P P +A P P + P P PPP P
Sbjct: 173 PYPPPPYPPPPNPPYP-PPPNPPYPPPPNA-PNPPPPNPPYPPPPNAPNPPYPPPPNAPN 230
Query: 909 XRXPPSP 929
PP P
Sbjct: 231 PPYPPPP 237
Score = 31.1 bits (67), Expect = 1.6
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = +1
Query: 643 PAXHPXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXP 768
P P PP PP PPP P P +P P P
Sbjct: 182 PPNPPYPPPPNPPYPPPPNAPNPPPPNPPYPPPPNAPNPPYP 223
Score = 30.3 bits (65), Expect = 2.9
Identities = 22/77 (28%), Positives = 24/77 (31%), Gaps = 3/77 (3%)
Frame = +3
Query: 708 PXXQXAXPXPLXXLPX-PPXXXVXCPXPARPMPDX--HHAXPFLSXLLPXHTTXLXRPXP 878
P P PL P PP P P P P + P P + P P
Sbjct: 150 PPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPNAPNPPPPNP 209
Query: 879 XLTPPPXCPPXRXPPSP 929
PPP P PP P
Sbjct: 210 PYPPPPNAPNPPYPPPP 226
Score = 29.9 bits (64), Expect = 3.8
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 643 PAXHPXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
P +P PP+ + PP PPP P+P P P P P + P
Sbjct: 163 PPPNPPPPN----APYPPPPYPPPPNPPYP-PPPNPPYPPPPNAPNP 204
Score = 29.5 bits (63), Expect = 5.0
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = +1
Query: 643 PAXHPXPPHXXXXSTXPPXTXGPPPXR-PHPXXSPXSPXLPXPXSXAP 783
P P PP PP PPP P+P SP +P P P P
Sbjct: 111 PPNPPYPPPPNAPYPPPPNPPYPPPPNAPYP-PSPNAPYPPPPNPPYP 157
Score = 29.1 bits (62), Expect = 6.6
Identities = 20/74 (27%), Positives = 23/74 (31%)
Frame = +3
Query: 708 PXXQXAXPXPLXXLPXPPXXXVXCPXPARPMPDXHHAXPFLSXLLPXHTTXLXRPXPXLT 887
P P P P PP P P P+ + P + P P
Sbjct: 98 PYPPYPPPPPYPPPPNPPYPPPP-NAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPY 156
Query: 888 PPPXCPPXRXPPSP 929
PPP PP PP P
Sbjct: 157 PPPLYPPPPNPPPP 170
Score = 28.7 bits (61), Expect = 8.7
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +1
Query: 646 AXHPXPPH-XXXXSTXPPXTXGPPPXRPHPXXS-PXSPXLPXPXSXAP 783
A +P PP+ PP PPP P+P P P P P P
Sbjct: 146 APYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNP 193
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 31.5 bits (68), Expect = 1.2
Identities = 25/76 (32%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Frame = +3
Query: 723 AXPXPLXXLPXPPXXXVXCPXPARPMPDXHHAXPFLSXLLPXHTT----XLXRPXPXLTP 890
A P P P PP V P P +P P P P T+ +P P T
Sbjct: 1038 AQPLPPPRKPSPPPSAVPIPPPRKPSPPPSEPAPPPRQPPPPSTSQPVPPPRQPDPIPTN 1097
Query: 891 P--PXCPPXRXP-PSP 929
P P PP R P P+P
Sbjct: 1098 PAHPTEPPPRQPKPTP 1113
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 31.1 bits (67), Expect = 1.6
Identities = 16/47 (34%), Positives = 17/47 (36%)
Frame = +1
Query: 643 PAXHPXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
P P PPH PP PPP P P P +P P P
Sbjct: 237 PMGAPPPPHSMPPPGMPPPGMMPPPGFP-PMGMPGMGGMPPPGMPPP 282
>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2388
Score = 31.1 bits (67), Expect = 1.6
Identities = 20/71 (28%), Positives = 23/71 (32%), Gaps = 4/71 (5%)
Frame = +3
Query: 729 PXPLXXLPXPPXXXVXCPXPARPMPDXHHAXPFLSXLLPXHTTXLXRPXPXLTPPP---- 896
P P PP + P PA P H P + + L P PPP
Sbjct: 353 PPPNLLFSFPPPPIIPIPPPAMPAMFNPHVPPPMIGPVTVPPPPLIPPPQASIPPPTMIQ 412
Query: 897 XCPPXRXPPSP 929
PP PP P
Sbjct: 413 TLPPPSVPPPP 423
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 31.1 bits (67), Expect = 1.6
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 655 PXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXL 759
P P ++ PP + GPPP P P P P L
Sbjct: 177 PAPAVPLAAASPPPPSGGPPPPPPPPPPPPPPPIL 211
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 30.7 bits (66), Expect = 2.2
Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Frame = +1
Query: 655 PXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXS---PXLPXPXSXAP 783
P PH P PPP PHP P P +P P + P
Sbjct: 424 PGAPHPRVPPPGAPHPRFPPPGAPHPRVPPPGAPHPRVPPPGAPHP 469
Score = 30.7 bits (66), Expect = 2.2
Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Frame = +1
Query: 655 PXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXS---PXLPXPXSXAP 783
P PH P PPP PHP P P +P P + P
Sbjct: 444 PGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHP 489
Score = 30.7 bits (66), Expect = 2.2
Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Frame = +1
Query: 655 PXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXS---PXLPXPXSXAP 783
P PH P PPP PHP P P +P P + P
Sbjct: 484 PGAPHPRVPPPGAPHQRVPPPGAPHPRVPPPGAPHPRVPPPGAPHP 529
Score = 30.7 bits (66), Expect = 2.2
Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Frame = +1
Query: 655 PXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXS---PXLPXPXSXAP 783
P PH P PPP PHP P P +P P + P
Sbjct: 504 PGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHP 549
Score = 30.7 bits (66), Expect = 2.2
Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Frame = +1
Query: 655 PXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXS---PXLPXPXSXAP 783
P PH P PPP PHP P P +P P + P
Sbjct: 524 PGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGASHPRVPPPGAPHP 569
Score = 30.3 bits (65), Expect = 2.9
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +1
Query: 655 PXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
P PH P PPP PHP P P P P P
Sbjct: 564 PGAPHPRVPPPGAPHPRVPPPGTPHPRVPP--PGAPHPKVPPP 604
Score = 29.5 bits (63), Expect = 5.0
Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Frame = +1
Query: 655 PXPPHXXXXSTXPPXTXGPPPXRPHP-XXSPXSPXLPXPXSXAP 783
P PH P PPP PHP P +P P AP
Sbjct: 464 PGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHQRVPPPGAP 507
>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
Length = 426
Score = 30.7 bits (66), Expect = 2.2
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = +3
Query: 756 PPXXXVXCPXPARPMPDXHHAXPFLSXLLPXHTTXL--XRPXPXLTPPPXCPP 908
PP V P PA P+P+ P LP + P L+PPP PP
Sbjct: 289 PPPAVVTAPPPAPPLPNFTSPSPPPPPPLPPAMPAMDDLLPPEVLSPPPPPPP 341
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 30.3 bits (65), Expect = 2.9
Identities = 24/74 (32%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Frame = +3
Query: 723 AXPXPLXXLPXPPXXXVX-CPXPARPMPDXHHAXPFLSXLLPXHTTXLXRPXPXLTP--- 890
A P PL P PP P P P+ P P T P P P
Sbjct: 309 APPPPLNATPPPPPPSRDQVPLPPPPLRGQIAPPPPPISKPPTSTRSAPPPPPGRAPQPL 368
Query: 891 --PPXCPPXRXPPS 926
PP PP R PPS
Sbjct: 369 GGPPPPPPGRRPPS 382
Score = 29.9 bits (64), Expect = 3.8
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Frame = +1
Query: 655 PXPPHXXXXSTXPP--XTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
P PPH S PP + GPPP P S S P S P
Sbjct: 195 PPPPHSRHGSAPPPPERSSGPPPPPPGRGPSQRSLAPPPTGSSRP 239
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 30.3 bits (65), Expect = 2.9
Identities = 24/74 (32%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Frame = +3
Query: 723 AXPXPLXXLPXPPXXXVX-CPXPARPMPDXHHAXPFLSXLLPXHTTXLXRPXPXLTP--- 890
A P PL P PP P P P+ P P T P P P
Sbjct: 221 APPPPLNATPPPPPPSRDQVPLPPPPLRGQIAPPPPPISKPPTSTRSAPPPPPGRAPQPL 280
Query: 891 --PPXCPPXRXPPS 926
PP PP R PPS
Sbjct: 281 GGPPPPPPGRRPPS 294
Score = 29.9 bits (64), Expect = 3.8
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Frame = +1
Query: 655 PXPPHXXXXSTXPP--XTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
P PPH S PP + GPPP P S S P S P
Sbjct: 107 PPPPHSRHGSAPPPPERSSGPPPPPPGRGPSQRSLAPPPTGSSRP 151
>SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08)
Length = 593
Score = 29.9 bits (64), Expect = 3.8
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +1
Query: 691 PPXTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
PP PPP P P P P P P P
Sbjct: 466 PPPPPPPPPPPPPPPPPPPPPPFPPPPPPTP 496
Score = 29.1 bits (62), Expect = 6.6
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +1
Query: 655 PXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSP 753
P PP PP PPP P P P +P
Sbjct: 464 PPPPPPPPPPPPPPPPPPPPPPPPFPPPPPPTP 496
>SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 29.9 bits (64), Expect = 3.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 840 LPXHTTXLXRPXPXLTPPPXCPPXRXPPSP 929
+P H L +P P + PPP P + P+P
Sbjct: 428 VPSHPPPLPQPPPSIIPPPTTPLPQTVPTP 457
>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 29.5 bits (63), Expect = 5.0
Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Frame = +1
Query: 643 PAXHPXPPHXXXXSTXPPXT--XGPPPXRPHPXXSPXSPXLPXP 768
P P PP + PP PPP P P P LP P
Sbjct: 51 PPPPPSPPAAAPAAPPPPAAAPAAPPPPAAPPAAPPPPPPLPAP 94
Score = 29.1 bits (62), Expect = 6.6
Identities = 17/60 (28%), Positives = 19/60 (31%)
Frame = +3
Query: 750 PXPPXXXVXCPXPARPMPDXHHAXPFLSXLLPXHTTXLXRPXPXLTPPPXCPPXRXPPSP 929
P PP PA P P P P P PPP P + PP+P
Sbjct: 50 PPPPPPSPPAAAPAAPPPPAAAPAAPPPPAAPPAAPPPPPPLPAPPPPPAQPAPQPPPAP 109
>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1041
Score = 29.5 bits (63), Expect = 5.0
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +1
Query: 664 PHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLP 762
P S P G PP RPHP SP P
Sbjct: 417 PQQQRQSPPQPSPTGAPPQRPHPPPQQPSPRPP 449
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 29.5 bits (63), Expect = 5.0
Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +3
Query: 708 PXXQXAXPXP-LXXLPXPPXXXVXCPXPARPMPDXHHAXPFLSXLLPXH-TTXLXRPXPX 881
P A P P + P PP PA P P A P S P + + L P P
Sbjct: 236 PSKAIATPNPPMPETPLPPATPNPFIPPASPNPSIPPAPPNPSIPAPPNPSIPLAPPNPY 295
Query: 882 LTP-PPXCPPXRXPPSP 929
+ P PP PP+P
Sbjct: 296 IPPAPPNLFIPSAPPNP 312
Score = 29.1 bits (62), Expect = 6.6
Identities = 21/85 (24%), Positives = 26/85 (30%), Gaps = 1/85 (1%)
Frame = +1
Query: 643 PAXHPXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXL-PXPXSXAPXXXXXXXXXXXX 819
P P PP T P PP PH +P P + P P + +
Sbjct: 191 PPAPPSPPIPTAPPTPPMPETPLPPGSPHIPPAPLHPHIPPAPPNPSKAIATPNPPMPET 250
Query: 820 XLSFLXSFPXTPPXSXAPHLXSRHP 894
L P PP S P + P
Sbjct: 251 PLPPATPNPFIPPASPNPSIPPAPP 275
Score = 28.7 bits (61), Expect = 8.7
Identities = 13/40 (32%), Positives = 16/40 (40%)
Frame = +1
Query: 643 PAXHPXPPHXXXXSTXPPXTXGPPPXRPHPXXSPXSPXLP 762
P+ P PP + P T P P P P SP +P
Sbjct: 182 PSTIPTPPTPPAPPSPPIPTAPPTPPMPETPLPPGSPHIP 221
>SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 29.5 bits (63), Expect = 5.0
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = +1
Query: 643 PAXHPXPPHXXXXSTXPPXTXG--PPPXRPHPXXSPXSPXLP 762
P P PP PP T G PPP HP +P P LP
Sbjct: 276 PTSQPPPP--------PPLTGGMLPPPFGGHPAAAPPPPPLP 309
>SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 29.5 bits (63), Expect = 5.0
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 691 PPXTXGPPPXRPHPXXSPXSPXLPXPXSXAP 783
PP PPP P P +P P P + AP
Sbjct: 96 PPPATPPPPTMPPTPPPPQTPAPPGPDTPAP 126
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 29.1 bits (62), Expect = 6.6
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 837 LLPXHTTXLXRPXPXLTPPPXCPPXRXPPSP 929
+LP + P P PPP PP PP P
Sbjct: 673 ILPIPIQTMVPPPPPPPPPPPPPPPPPPPQP 703
>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 29.1 bits (62), Expect = 6.6
Identities = 20/70 (28%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Frame = +3
Query: 723 AXPXPLXXLPXPPXXX--VXCPXPARPMPDXHHAXPFLSXLLPXHTTXLXRPXPXLT--P 890
A P P P PP P P P+P + P P P P ++ P
Sbjct: 750 APPLPPKVTPKPPAPPQFAPVPPPCAPIPPMPCSAPLPPAPAPFSAAPHLPPAPNISAEP 809
Query: 891 PPXCPPXRXP 920
PP P R P
Sbjct: 810 PPPPPVARKP 819
>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 28.7 bits (61), Expect = 8.7
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 867 RPXPXLTPPPXCPPXRXPPSP 929
RP P PPP PP PP P
Sbjct: 861 RPRPRRPPPPPPPPPPPPPPP 881
>SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 994
Score = 28.7 bits (61), Expect = 8.7
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = -3
Query: 271 GGSDDGSHKGESYNDDQFHX**XWFXPAGTR*QTDHXRGAFCKSARPSKXTPPSLLLE*L 92
GG D G + G N W P G Q + A +S PS TPP +++ L
Sbjct: 98 GGGDFGPYGGGGANAGGMPHHPVWNHPGGDMGQMQMGQDARQRSDGPSLETPPGPVMQTL 157
Query: 91 KR 86
K+
Sbjct: 158 KQ 159
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,376,275
Number of Sequences: 59808
Number of extensions: 267632
Number of successful extensions: 2077
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1618
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3331927433
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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