Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_L09
(925 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 41 0.001
At1g15830.1 68414.m01900 expressed protein 33 0.27
At3g15000.1 68416.m01897 expressed protein similar to DAG protei... 32 0.47
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 31 1.4
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t... 31 1.4
At5g45350.1 68418.m05567 proline-rich family protein contains pr... 29 4.4
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 29 4.4
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 29 5.8
At5g24350.1 68418.m02870 expressed protein weak similarity to ne... 28 7.6
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 28 7.6
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 28 7.6
At1g31750.1 68414.m03895 proline-rich family protein contains pr... 28 7.6
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 41.1 bits (92), Expect = 0.001
Identities = 17/27 (62%), Positives = 17/27 (62%)
Frame = -2
Query: 477 PPXXGGGXPPPXRXXXXGGPPPPPXGG 397
PP GGG PPP GGPPPPP GG
Sbjct: 672 PPLPGGGPPPPP-PPPGGGPPPPPGGG 697
Score = 35.5 bits (78), Expect = 0.050
Identities = 15/24 (62%), Positives = 15/24 (62%)
Frame = -2
Query: 477 PPXXGGGXPPPXRXXXXGGPPPPP 406
PP GGG PPP GGPPPPP
Sbjct: 683 PPPPGGGPPPP----PGGGPPPPP 702
Score = 31.5 bits (68), Expect = 0.82
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +1
Query: 397 PPXGGGGGPPXXXXPXXXGXPPPXXGG 477
PP GG GPP P G PPP GG
Sbjct: 672 PPLPGG-GPPPPPPPPGGGPPPPPGGG 697
>At1g15830.1 68414.m01900 expressed protein
Length = 483
Score = 33.1 bits (72), Expect = 0.27
Identities = 30/87 (34%), Positives = 31/87 (35%), Gaps = 1/87 (1%)
Frame = +1
Query: 397 PPXGGGGGPPXXXXPXXXGXPPPXXGGXKNFFXGKXXXPXFFXXPPXXXKXXXPP-PGXF 573
PP GGGG P G PPP GG G+ P PP P PG
Sbjct: 188 PPKRGGGGEPVIP-----GAPPPKRGGG-----GEPVIPG--APPPKRGGGGEPVIPGA- 234
Query: 574 FFFSXXXGGGGGXFXXKXTPPPXGGGG 654
GGGG PPP GGG
Sbjct: 235 ---PLPKRGGGGESVVPGAPPPKRGGG 258
Score = 32.3 bits (70), Expect = 0.47
Identities = 30/87 (34%), Positives = 31/87 (35%), Gaps = 1/87 (1%)
Frame = +1
Query: 397 PPXGGGGGPPXXXXPXXXGXPPPXXGGXKNFFXGKXXXPXFFXXPPXXXKXXXPP-PGXF 573
PP GGGG P G PPP GG G+ P PP P PG
Sbjct: 124 PPIRGGGGEPAIP-----GAPPPKRGGG-----GEPVIPG--APPPKRGGGGEPVIPGA- 170
Query: 574 FFFSXXXGGGGGXFXXKXTPPPXGGGG 654
GGGG PPP GGG
Sbjct: 171 ---PPPKRGGGGEPVIPGAPPPKRGGG 194
Score = 29.5 bits (63), Expect = 3.3
Identities = 26/82 (31%), Positives = 27/82 (32%)
Frame = +1
Query: 409 GGGGPPXXXXPXXXGXPPPXXGGXKNFFXGKXXXPXFFXXPPXXXKXXXPPPGXFFFFSX 588
GGGG P G PPP GG + G P PPP
Sbjct: 97 GGGGEPVIP-----GAPPPNRGGGETVIPGAP--PPIRGGGGEPAIPGAPPPKR------ 143
Query: 589 XXGGGGGXFXXKXTPPPXGGGG 654
GGGG PPP GGG
Sbjct: 144 ---GGGGEPVIPGAPPPKRGGG 162
>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
(required for chloroplast differentiation and palisade
development) GB:Q38732 [Antirrhinum majus]
Length = 395
Score = 32.3 bits (70), Expect = 0.47
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -2
Query: 477 PPXXGGGXPPPXRXXXXGGPPPP 409
PP GG PPP GPPPP
Sbjct: 264 PPHMGGSAPPPPHMGQNYGPPPP 286
Score = 31.5 bits (68), Expect = 0.82
Identities = 24/86 (27%), Positives = 25/86 (29%)
Frame = +1
Query: 397 PPXGGGGGPPXXXXPXXXGXPPPXXGGXKNFFXGKXXXPXFFXXPPXXXKXXXPPPGXFF 576
PP GG PP G PPP N G P + P PP
Sbjct: 264 PPHMGGSAPPPPHMGQNYGPPPP------NNMGGPRHPPPYGAPPQNNMGGPRPPQNYGG 317
Query: 577 FFSXXXGGGGGXFXXKXTPPPXGGGG 654
GG PPP GGG
Sbjct: 318 TPPPNYGGAPPANNMGGAPPPNYGGG 343
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 459 GXPPPXRXXXXGGPPPPPXGG 397
G PPP R G PPPP GG
Sbjct: 239 GGPPPQRPPMGGPPPPPHIGG 259
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -2
Query: 477 PPXXGGGXPPPXRXXXXGGPPPPPXGG 397
PP GG PPP G PPPP G
Sbjct: 254 PPHIGGSAPPPPH--MGGSAPPPPHMG 278
Score = 28.3 bits (60), Expect = 7.6
Identities = 21/86 (24%), Positives = 23/86 (26%)
Frame = +3
Query: 396 PPLXGGGGAPXXKXXXXXGXPPPXXXGXKKFFFXXXXXPPFFXXPPXXXXXXXTPPXXXX 575
PP GG P G PPP G + PP + PP PP
Sbjct: 264 PPHMGGSAPPPPHMGQNYGPPPPNNMGGPR-------HPPPYGAPPQNNMGGPRPPQNYG 316
Query: 576 XXXXXXXXXXXXFXXKKXPPPPXGGG 653
PPP GG
Sbjct: 317 GTPPPNYGGAPPANNMGGAPPPNYGG 342
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = +1
Query: 397 PPXGGGGGPPXXXXPXXXGXPPPXXGGXKNFFXGKXXXPXFFXXPP 534
PP GG PP G PPP GG G P + PP
Sbjct: 319 PPPNYGGAPPANNM---GGAPPPNYGGGPPPQYGAVPPPQYGGAPP 361
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Frame = +1
Query: 397 PPXGGGGGPPXXXX--PXXXGXPPPXXGG 477
PP G GGPP P G PPP GG
Sbjct: 165 PPFAGQGGPPPPYGMRPPYPGPPPPQYGG 193
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Frame = -2
Query: 477 PPXXGGGXPPP--XRXXXXGGPPPPPXGG 397
PP G G PPP GPPPP GG
Sbjct: 165 PPFAGQGGPPPPYGMRPPYPGPPPPQYGG 193
>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to auxin
down regulated GB:X69640 GI:296442 from [Glycine max];
contains Pfam profile PF00234: Protease inhibitor/seed
storage/LTP family
Length = 297
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -2
Query: 465 GGGXPPPXRXXXXGGPPPPPXGG 397
GGG PP GG PPP GG
Sbjct: 48 GGGSKPPPHHGGKGGGKPPPHGG 70
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/55 (30%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Frame = +1
Query: 406 GGGGG--PPXXXXPXXXGXPPPXXGGXKNFFXGKXXXPXFFXXPPXXXKXXXPPP 564
GGGGG PP P PPP + P PP PPP
Sbjct: 82 GGGGGKSPPVVRPPPVVVRPPPIIRPPPVVYPPPIVRPPPITRPPIIIPPIQPPP 136
>At5g45350.1 68418.m05567 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 177
Score = 29.1 bits (62), Expect = 4.4
Identities = 23/74 (31%), Positives = 24/74 (32%), Gaps = 3/74 (4%)
Frame = +1
Query: 397 PPXGG---GGGPPXXXXPXXXGXPPPXXGGXKNFFXGKXXXPXFFXXPPXXXKXXXPPPG 567
PP G G PP P G PP G G P + PP PP G
Sbjct: 39 PPPGAYPPAGYPPGAYPPAPGGYPPAPGYG------GYPPAPGYGGYPPAPGHGGYPPAG 92
Query: 568 XFFFFSXXXGGGGG 609
S GG GG
Sbjct: 93 YPAHHSGHAGGIGG 106
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +1
Query: 397 PPXGGGGGPPXXXXPXXXGXPPPXXGG 477
PP G GPP P G PPP G
Sbjct: 152 PPGGVPSGPPSGARPIGFGSPPPMGPG 178
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = -2
Query: 477 PPXXGGGXPPPXRXXXXGGPPPPPXGG 397
PP PPP PPPPP G
Sbjct: 389 PPSAAAPPPPPPPKKGPAAPPPPPPPG 415
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -2
Query: 477 PPXXGGGXPPPXRXXXXGGPPPPP 406
PP G PPP GPP PP
Sbjct: 413 PPGKKGAGPPPPPPMSKKGPPKPP 436
>At5g24350.1 68418.m02870 expressed protein weak similarity to
neuroblastoma-amplified protein [Homo sapiens]
GI:4337460
Length = 2376
Score = 28.3 bits (60), Expect = 7.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 18 CLTYSWPSLKXLXCWY 65
CL Y+WPS + L WY
Sbjct: 676 CLGYNWPSSEELAAWY 691
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 28.3 bits (60), Expect = 7.6
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -2
Query: 486 IFXPPXXGGGXPPPXRXXXXGGPPPPP 406
++ PP PPP PPPPP
Sbjct: 572 VYSPPPPVASPPPPSPPPPVHSPPPPP 598
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Frame = -2
Query: 477 PPXXGGGX---PPPXRXXXXGGPPPPPXGG 397
PP G G PPP PPPPP G
Sbjct: 742 PPGLGRGTSSGPPPLGAKGSNAPPPPPPAG 771
>At1g31750.1 68414.m03895 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 176
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -2
Query: 477 PPXXGGGXPPPXRXXXXGGPPPP 409
PP G PPP G PPPP
Sbjct: 30 PPPPQGAYPPPGGYPPQGYPPPP 52
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,149,240
Number of Sequences: 28952
Number of extensions: 231470
Number of successful extensions: 1176
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2197951248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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