Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L08
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         31   0.21 
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    29   1.1  
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    26   7.9  

>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +1

Query: 439 HIMLCGSS-NYISNI*HTTVIA-FLRVTECIYYYIHILNYVSI 561
           HI  C SS NY  +I H   +A FL +++C YY+ HIL  V +
Sbjct: 48  HIFKCLSSCNYALSILHNICLASFLYLSKC-YYHTHILTSVRL 89


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 202 PGXRSSADRAESQHQREDEAQKTDEXXXTERTRVPEKAKGQD 77
           P   SSA+R  SQHQ+ + + +  +        V EK+  Q+
Sbjct: 114 PSANSSAERTSSQHQKPETSSQIGKDNAAPVENVNEKSTSQE 155


>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 279 AIAGPALINPARTLRPTCAXCLKSXHLGXGAALTAP 172
           AIA P +I+P  ++RP  +  +KS      A + +P
Sbjct: 202 AIADPNIISPIDSVRPLLSLFIKSITSAISALILSP 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,987,799
Number of Sequences: 5004
Number of extensions: 30801
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)