Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L08
         (863 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.40 
SB_2479| Best HMM Match : SecA_PP_bind (HMM E-Value=0.94)              28   8.5  
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)                   28   8.5  

>SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1221

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 214 EEXPPGXRSSADRAESQHQREDEAQKTDEXXXTERT 107
           +E P G   SA+ +E +H +ED+ Q+ D+    E T
Sbjct: 686 DEKPQGKTESANPSEEEHNKEDKPQEKDDDKSEEET 721


>SB_2479| Best HMM Match : SecA_PP_bind (HMM E-Value=0.94)
          Length = 327

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 412 HKAFLYLLCHIMLCGSSNYISNI 480
           H AFL LLCH++     +++ NI
Sbjct: 147 HNAFLSLLCHVVYSAEPDWLMNI 169


>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
          Length = 1249

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 114 KGRECRRRQKAKTRAXDANAKKEQSXKXARE 22
           K +E RRRQ+ K RA +   +K +  K ARE
Sbjct: 242 KRQEERRRQEEKRRAEEEAKRKAEEEKAARE 272


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,967,821
Number of Sequences: 59808
Number of extensions: 222714
Number of successful extensions: 458
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)