Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L07
         (897 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.059
SB_36926| Best HMM Match : Flocculin (HMM E-Value=0.93)                30   2.2  
SB_44684| Best HMM Match : Synaphin (HMM E-Value=7.5)                  28   8.9  

>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1297

 Score = 35.5 bits (78), Expect = 0.059
 Identities = 33/109 (30%), Positives = 43/109 (39%)
 Frame = +3

Query: 231 QMGGGKVFGTLGQNXXGLFGKAGYNSXXFNDXRGKLTGQAYGTRVLGPGGDSTNYGGRLD 410
           Q G G  FGT      GLFG AG N+       G +TG  +G         ST +GG   
Sbjct: 48  QTGFGSGFGTTQTTGTGLFGAAGTNTGTGLFGGGTVTGSMFGQPA---SAASTGFGGFGS 104

Query: 411 WANKNAQATIDLNRQIGGRSGMTASGSGVWDLDKNTHFSAGGMVSKEFG 557
            A  N       N    G    T +G+G++   +   F  GG  +  FG
Sbjct: 105 TAGTNTGGLFG-NTAASG----TTTGTGLFGQTQGAAF--GGTSTSGFG 146


>SB_36926| Best HMM Match : Flocculin (HMM E-Value=0.93)
          Length = 206

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = +3

Query: 249 VFGTLGQNXXGLFGKAGYNSXXFNDXRGKLTGQAYGTRVLGPGGDSTNYGGRLDWANKNA 428
           VFG+ GQ    LF  +   S   N+ +  L G  +GT  LG G      G     ++ N 
Sbjct: 85  VFGSTGQPGGSLFVASSPGSGFGNNSQPGLFGTGFGTSQLGQGTGLLGNGTVATASSNNL 144

Query: 429 QAT 437
            AT
Sbjct: 145 PAT 147


>SB_44684| Best HMM Match : Synaphin (HMM E-Value=7.5)
          Length = 141

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 507 DKNTHFSAGGMVSKEFGHKRPDVGLQAEIRHD 602
           + +  F  G ++ +EFGHKRP    +A    D
Sbjct: 64  EMDEEFGIGELIHEEFGHKRPSSSRKAYTSRD 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,007,743
Number of Sequences: 59808
Number of extensions: 440955
Number of successful extensions: 1438
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1437
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)