Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L07
         (897 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ...    29   5.5  
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein...    29   5.5  
At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger) fa...    28   7.3  

>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
           protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 423

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 32/118 (27%), Positives = 45/118 (38%)
 Frame = +3

Query: 183 GXQPSRRHPRAVTWAKQMGGGKVFGTLGQNXXGLFGKAGYNSXXFNDXRGKLTGQAYGTR 362
           G  P R  P A+ ++ + GGG   G   +    + G  GY         G + G +YG  
Sbjct: 283 GVGPYRGEP-ALGYSGRYGGGG--GGYNRGGYSMGGGGGYGGGP-----GDMYGGSYGEP 334

Query: 363 VLGPGGDSTNYGGRLDWANKNAQATIDLNRQIGGRSGMTASGSGVWDLDKNTHFSAGG 536
             G GG S +YGG        +         +GG  G    G G +D+       AGG
Sbjct: 335 GGGYGGPSGSYGG-----GYGSSGIGGYGGGMGGAGGGGYRGGGGYDMGGVGGGGAGG 387


>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative 
          Length = 404

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 26/109 (23%), Positives = 43/109 (39%)
 Frame = +3

Query: 207 PRAVTWAKQMGGGKVFGTLGQNXXGLFGKAGYNSXXFNDXRGKLTGQAYGTRVLGPGGDS 386
           PR+ +W  Q   G  +G +G      +G +G          G   G  YG++  G GG+ 
Sbjct: 287 PRS-SWGAQAPSG--YGNVGYGNAAPWGGSGGPGSAVMGQAGASAG--YGSQGYGYGGND 341

Query: 387 TNYGGRLDWANKNAQATIDLNRQIGGRSGMTASGSGVWDLDKNTHFSAG 533
           ++YG    +     ++    N   GG       GSG +   +  +  AG
Sbjct: 342 SSYGTPSAYGAVGGRSGNMPNNHGGGGYADALDGSGGYGNHQGNNGQAG 390


>At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 383

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 248 GLWHFGXKRXWTLWKSWLQQRXL**RPRQT 337
           G+  +   R W  WK W  QR L  RP  +
Sbjct: 284 GILSYAAVRTWNKWKQWNHQRELPQRPNDS 313


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,647,857
Number of Sequences: 28952
Number of extensions: 298824
Number of successful extensions: 770
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)