Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L06
         (1050 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           26   0.55 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   9.0  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 25.8 bits (54), Expect = 0.55
 Identities = 14/46 (30%), Positives = 17/46 (36%)
 Frame = +1

Query: 592 PGPPTTMXXHPXPRTSPXAXAPGPQSXEXTAXLXHLPPPXXXPXTT 729
           P P   +   P P  SP    PG  +   T+      PP   P TT
Sbjct: 82  PDPEIPVAPEPAPLASPLVQEPGSSTTSATSGAVMASPP--MPITT 125


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +2

Query: 938 PXXPXPXTPXPPLXPPXXLS 997
           P    P  P PP+ PP  ++
Sbjct: 176 PLPQVPPLPLPPIFPPTMIN 195


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,650
Number of Sequences: 336
Number of extensions: 2228
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 30001227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)