Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_L06
(1050 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 125 9e-30
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 125 9e-30
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 125 9e-30
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 68 3e-12
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 54 3e-08
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 29 1.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 1.9
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 28 2.5
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 28 2.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 5.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 7.7
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 125 bits (302), Expect = 9e-30
Identities = 61/83 (73%), Positives = 64/83 (77%)
Frame = +2
Query: 122 MGKEXTHINHCPSSRHVDSGKSTTTGHLIYKCGGIDXRTIXXFXXEAHEMGXGSFKYAWV 301
MGKE HIN HVDSGKSTTTGHLIYKCGGID RTI F EA E+G GSFKYAWV
Sbjct: 1 MGKEKGHINVVVIG-HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWV 59
Query: 302 LDXLXADRXRGIXIDIALWKFQT 370
LD L A+R RGI IDIALWKF+T
Sbjct: 60 LDKLKAERERGITIDIALWKFET 82
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 125 bits (302), Expect = 9e-30
Identities = 61/83 (73%), Positives = 64/83 (77%)
Frame = +2
Query: 122 MGKEXTHINHCPSSRHVDSGKSTTTGHLIYKCGGIDXRTIXXFXXEAHEMGXGSFKYAWV 301
MGKE HIN HVDSGKSTTTGHLIYKCGGID RTI F EA E+G GSFKYAWV
Sbjct: 1 MGKEKGHINVVVIG-HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWV 59
Query: 302 LDXLXADRXRGIXIDIALWKFQT 370
LD L A+R RGI IDIALWKF+T
Sbjct: 60 LDKLKAERERGITIDIALWKFET 82
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 125 bits (302), Expect = 9e-30
Identities = 61/83 (73%), Positives = 64/83 (77%)
Frame = +2
Query: 122 MGKEXTHINHCPSSRHVDSGKSTTTGHLIYKCGGIDXRTIXXFXXEAHEMGXGSFKYAWV 301
MGKE HIN HVDSGKSTTTGHLIYKCGGID RTI F EA E+G GSFKYAWV
Sbjct: 1 MGKEKGHINVVVIG-HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWV 59
Query: 302 LDXLXADRXRGIXIDIALWKFQT 370
LD L A+R RGI IDIALWKF+T
Sbjct: 60 LDKLKAERERGITIDIALWKFET 82
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 67.7 bits (158), Expect = 3e-12
Identities = 30/74 (40%), Positives = 45/74 (60%)
Frame = +2
Query: 149 HCPSSRHVDSGKSTTTGHLIYKCGGIDXRTIXXFXXEAHEMGXGSFKYAWVLDXLXADRX 328
H + HVDSGKST G ++++ G I+ R++ EA G GSF YAW+LD +R
Sbjct: 179 HLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERA 238
Query: 329 RGIXIDIALWKFQT 370
RG+ +D+A F++
Sbjct: 239 RGVTMDVASTTFES 252
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 54.0 bits (124), Expect = 3e-08
Identities = 24/68 (35%), Positives = 39/68 (57%)
Frame = +2
Query: 167 HVDSGKSTTTGHLIYKCGGIDXRTIXXFXXEAHEMGXGSFKYAWVLDXLXADRXRGIXID 346
HVD+GKST G++++ G +D RT+ EA E G S+ +W LD +R +G ++
Sbjct: 246 HVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVE 305
Query: 347 IALWKFQT 370
+ F+T
Sbjct: 306 VGRAYFET 313
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 29.1 bits (62), Expect = 1.1
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = +2
Query: 128 KEXTHINHCPSSRHVDSGKSTTTGHLIYKCGGIDXRTIXXFXXEAHEMGXGSFKYAWVLD 307
K I + S H+DSGK+T T ++Y G I + HE+ G +D
Sbjct: 54 KRLKQIRNIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMD 103
Query: 308 XLXADRXRGIXIDIA 352
+ +R +GI I A
Sbjct: 104 FMELEREKGITIQSA 118
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/69 (24%), Positives = 21/69 (30%), Gaps = 1/69 (1%)
Frame = +1
Query: 592 PGPPTTMXXHPXPRTSPXAXAPGPQSXEXTAXLXHLPP-PXXXPXTTPAXXTYPXPPIXP 768
P P P P +P P + A +PP P P PP+
Sbjct: 1143 PKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPK 1202
Query: 769 PXXGXPQXP 795
P G P P
Sbjct: 1203 PSVGVPPVP 1211
Score = 28.3 bits (60), Expect = 1.9
Identities = 16/69 (23%), Positives = 25/69 (36%)
Frame = +1
Query: 592 PGPPTTMXXHPXPRTSPXAXAPGPQSXEXTAXLXHLPPPXXXPXTTPAXXTYPXPPIXPP 771
P P P P++S A + P ++ + +P P P P PP+ P
Sbjct: 1041 PPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAP---PVPAPSGIPPVPKP 1097
Query: 772 XXGXPQXPR 798
P P+
Sbjct: 1098 SVAAPPVPK 1106
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.3 bits (60), Expect = 1.9
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +1
Query: 700 PPPXXXPXTTPAXXTYPXPPIXPPXXGXPQXP 795
PPP TPA P PP P G P P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 122 MGKEXTHINHCPSSRHVDSGKSTTTGHLIYKCG 220
MGK +++ + HVD GKST T L+ K G
Sbjct: 13 MGKP-SNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 122 MGKEXTHINHCPSSRHVDSGKSTTTGHLIYKCG 220
MGK +++ + HVD GKST T L+ K G
Sbjct: 13 MGKP-SNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.6 bits (56), Expect = 5.8
Identities = 15/52 (28%), Positives = 20/52 (38%)
Frame = +1
Query: 640 PXAXAPGPQSXEXTAXLXHLPPPXXXPXTTPAXXTYPXPPIXPPXXGXPQXP 795
P A + P + T+ + LPPP T + PP PP G P
Sbjct: 888 PGASSAQPAAMSRTSSVSTLPPPPPTASMTASAPAIASPP--PPKVGETYHP 937
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 7.7
Identities = 19/73 (26%), Positives = 24/73 (32%), Gaps = 4/73 (5%)
Frame = +1
Query: 592 PGPPTTMXXHPXPRTSPXAXAPGPQSXEXTAXLXHLPPPXXXPXTTPAXXTYP--XPPIX 765
P PPT P ++P + P S + PP PA P PP
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSA 187
Query: 766 P--PXXGXPQXPR 798
P P P P+
Sbjct: 188 PSLPSAVPPMPPK 200
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,154
Number of Sequences: 5004
Number of extensions: 30465
Number of successful extensions: 91
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 551223336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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