Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_L06
         (1050 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   129   5e-32
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   129   5e-32
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    46   4e-07
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    24   2.0  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  129 bits (311), Expect = 5e-32
 Identities = 71/119 (59%), Positives = 75/119 (63%)
 Frame = +2

Query: 122 MGKEXTHINHCPSSRHVDSGKSTTTGHLIYKCGGIDXRTIXXFXXEAHEMGXGSFKYAWV 301
           MGKE  HIN      HVDSGKSTTTGHLIYKCGGID RTI  F  EA EMG GSFKYAWV
Sbjct: 1   MGKEKIHINIVVIG-HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 59

Query: 302 LDXLXADRXRGIXIDIALWKFQTXPVLC*XXXXSXPPXFHQXTXSQEPSQAXCXXLIVA 478
           LD L A+R RGI IDIALWKF+T               F +   +   SQA C  LIVA
Sbjct: 60  LDKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMIT-GTSQADCAVLIVA 117


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  129 bits (311), Expect = 5e-32
 Identities = 71/119 (59%), Positives = 75/119 (63%)
 Frame = +2

Query: 122 MGKEXTHINHCPSSRHVDSGKSTTTGHLIYKCGGIDXRTIXXFXXEAHEMGXGSFKYAWV 301
           MGKE  HIN      HVDSGKSTTTGHLIYKCGGID RTI  F  EA EMG GSFKYAWV
Sbjct: 1   MGKEKIHINIVVIG-HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 59

Query: 302 LDXLXADRXRGIXIDIALWKFQTXPVLC*XXXXSXPPXFHQXTXSQEPSQAXCXXLIVA 478
           LD L A+R RGI IDIALWKF+T               F +   +   SQA C  LIVA
Sbjct: 60  LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMIT-GTSQADCAVLIVA 117


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 46.4 bits (105), Expect = 4e-07
 Identities = 28/61 (45%), Positives = 32/61 (52%)
 Frame = +2

Query: 296 WVLDXLXADRXRGIXIDIALWKFQTXPVLC*XXXXSXPPXFHQXTXSQEPSQAXCXXLIV 475
           WVLD L A+R RGI IDIALWKF+T               F +   +   SQA C  LIV
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMIT-GTSQADCAVLIV 59

Query: 476 A 478
           A
Sbjct: 60  A 60


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = +2

Query: 344 DIALWKFQTXPVLC*XXXXSXPPXFHQXTXSQEPSQAXCXXLIVA 478
           DIALWKF+T               F +   +   SQA C  LIVA
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMIT-GTSQADCAVLIVA 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,646
Number of Sequences: 438
Number of extensions: 3597
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 34945290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)